miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48852_osa-miR166i:pmrd
Length = 145
Score = 287 bits (145), Expect = 1e-78
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 1 agataggtgtttggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agataggtgtttggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatc 60
Query: 61 atatcttgtgatatgggggatatgcaacaggtgtgtgacaggggtaggtagatctcggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatcttgtgatatgggggatatgcaacaggtgtgtgacaggggtaggtagatctcggat 120
Query: 121 caggcttcattcctcacaccaatac 145
|||||||||||||||||||||||||
Sbjct: 121 caggcttcattcctcacaccaatac 145
>48853_osa-miR166j:pmrd
Length = 140
Score = 278 bits (140), Expect = 1e-75
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 agataggtgtttggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agataggtgtttggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatc 60
Query: 61 atatcttgtgatatgggggatatgcaacaggtgtgtgacaggggtaggtagatctcggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatcttgtgatatgggggatatgcaacaggtgtgtgacaggggtaggtagatctcggat 120
Query: 121 caggcttcattcctcacacc 140
||||||||||||||||||||
Sbjct: 121 caggcttcattcctcacacc 140
>51639_ptc-miR166o:pmrd
Length = 324
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ggtgtttggaatgcagtttgatccaagatc 35
||||||||||||| ||||||||||||||||
Sbjct: 5 ggtgtttggaatgaagtttgatccaagatc 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacc 140
||||||||| |||||||||||||| |||||
Sbjct: 292 gatctcggaccaggcttcattccttacacc 321
>51638_ptc-miR166n:pmrd
Length = 331
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ggtgtttggaatgcagtttgatccaagatc 35
||||||||||||| ||||||||||||||||
Sbjct: 5 ggtgtttggaatgaagtttgatccaagatc 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacc 140
||||||||| |||||||||||||| |||||
Sbjct: 299 gatctcggaccaggcttcattccttacacc 328
>48850_osa-miR166g:pmrd
Length = 145
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacc 140
||||||||| ||||||||||||||||||||
Sbjct: 111 gatctcggaccaggcttcattcctcacacc 140
>54789_vvi-miR166a:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacaccaa 142
||||||||| |||||||||||||| |||||||
Sbjct: 96 gatctcggaccaggcttcattcctgacaccaa 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 ggtgtttggaatgcagtttgatccaagatc 35
||||||||||||| |||||||||||||||
Sbjct: 4 ggtgtttggaatgaggtttgatccaagatc 33
>54968_zma-miR166l:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 agatctcggatcaggcttcattcctca 136
|||||||||| ||||||||||||||||
Sbjct: 93 agatctcggaccaggcttcattcctca 119
>46868_aqc-miR166c:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacca 141
||||||||| |||||||||||||| ||||||
Sbjct: 85 gatctcggaccaggcttcattccttacacca 115
>54957_zma-miR166a:pmrd
Length = 213
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gtagatctcggatcaggcttcattcc 133
|||||||||||| |||||||||||||
Sbjct: 182 gtagatctcggaccaggcttcattcc 207
>54423_sbi-miR166h:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gtagatctcggatcaggcttcattcc 133
|||||||||||| |||||||||||||
Sbjct: 155 gtagatctcggaccaggcttcattcc 180
>48845_osa-miR166b:pmrd
Length = 206
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gtagatctcggatcaggcttcattcc 133
|||||||||||| |||||||||||||
Sbjct: 161 gtagatctcggaccaggcttcattcc 186
>48713_mtr-miR166c:pmrd
Length = 171
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctc 135
||||||||| |||||||||||||||
Sbjct: 147 gatctcggaccaggcttcattcctc 171
>54960_zma-miR166d:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 agatctcggatcaggcttcattcc 133
|||||||||| |||||||||||||
Sbjct: 79 agatctcggaccaggcttcattcc 102
>54958_zma-miR166b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 agatctcggatcaggcttcattcc 133
|||||||||| |||||||||||||
Sbjct: 91 agatctcggaccaggcttcattcc 114
>54416_sbi-miR166a:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 agatctcggatcaggcttcattcc 133
|||||||||| |||||||||||||
Sbjct: 83 agatctcggaccaggcttcattcc 106
