miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48854_osa-miR166k:pmrd
Length = 127
Score = 252 bits (127), Expect = 5e-68
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 1 attaggttaaggggtttgttgtctggctcgaggcatccgggactccggtttctcctttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attaggttaaggggtttgttgtctggctcgaggcatccgggactccggtttctcctttcc 60
Query: 61 tactggaggcgcctaatttccggcgagctcggagcctcggaccaggcttcaatcccttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tactggaggcgcctaatttccggcgagctcggagcctcggaccaggcttcaatcccttta 120
Query: 121 accatgc 127
|||||||
Sbjct: 121 accatgc 127
>54422_sbi-miR166g:pmrd
Length = 134
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcaatccctttaaccatgc 127
|||||||||||||||||||||||||||||||
Sbjct: 95 tcggaccaggcttcaatccctttaaccatgc 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 attaggttaaggggtttgttgtctggctcg 30
||||||||| |||| |||||||||||||||
Sbjct: 11 attaggttagggggattgttgtctggctcg 40
>48855_osa-miR166l:pmrd
Length = 117
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 96 ctcggaccaggcttcaatccctttaacca 124
|||||||||||||||||||||||||||||
Sbjct: 86 ctcggaccaggcttcaatccctttaacca 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 ttaggttaaggggtttgttgtctgg 26
||||||||||||| |||||||||||
Sbjct: 2 ttaggttaaggggattgttgtctgg 26
>54967_zma-miR166k:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcaatccctttaaccatgc 127
||||||||||||||||||||||| |||||||
Sbjct: 129 tcggaccaggcttcaatccctttgaccatgc 159
>54966_zma-miR166j:pmrd
Length = 154
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 ctcggaccaggcttcaatccctttaac 122
|||||||||||||||||||||||||||
Sbjct: 114 ctcggaccaggcttcaatccctttaac 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 attaggttaaggggtttgtt 20
||||||||||||||||||||
Sbjct: 11 attaggttaaggggtttgtt 30
>54420_sbi-miR166e:pmrd
Length = 151
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 ctcggaccaggcttcaatccctttaac 122
|||||||||||||||||||||||||||
Sbjct: 111 ctcggaccaggcttcaatccctttaac 137
>48856_osa-miR166m:pmrd
Length = 200
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 95 cctcggaccaggcttcaatccctttaacca 124
||||||||||||||||| ||||||||||||
Sbjct: 145 cctcggaccaggcttcattccctttaacca 174
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggttaaggggtttgttgtctgg 26
||||||||||||||||||||||
Sbjct: 30 ggttaaggggtttgttgtctgg 51
>54792_vvi-miR166d:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aggggtttgttgtctggctcgaggc 34
||||| |||||||||||||||||||
Sbjct: 9 aggggattgttgtctggctcgaggc 33
>51373_ppt-miR166f:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 agcctcggaccaggcttcaatccc 116
||||||||||||||||||| ||||
Sbjct: 70 agcctcggaccaggcttcattccc 93
