miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48873_osa-miR168a:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
Query: 61 cgccttgcaccaagtgaatcggagccg 87
|||||||||||||||||||||||||||
Sbjct: 61 cgccttgcaccaagtgaatcggagccg 87
>48872_osa-miR168a:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
Query: 61 cgccttgcaccaagtgaatcggagccg 87
|||||||||||||||||||||||||||
Sbjct: 61 cgccttgcaccaagtgaatcggagccg 87
>48871_osa-miR168a:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
Query: 61 cgccttgcaccaagtgaatcggagccg 87
|||||||||||||||||||||||||||
Sbjct: 61 cgccttgcaccaagtgaatcggagccg 87
>48875_osa-miR168m:pmrd
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 60
Query: 71 caagtga 77
|||||||
Sbjct: 61 caagtga 67
>54999_zma-miR168a:pmrd
Length = 104
Score = 109 bits (55), Expect = 3e-25
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
||||||||||||||||||||||||||||||||||||||| | || | | ||| |||||||
Sbjct: 11 cgcctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcc 68
Query: 61 cgccttgcaccaagtgaatcggagccg 87
|||||||||||||||||||||||||||
Sbjct: 69 cgccttgcaccaagtgaatcggagccg 95
>54636_sof-miR168a:pmrd
Length = 104
Score = 109 bits (55), Expect = 3e-25
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
||||||||||||||||||||||||||||||||||||||| | || | | ||| |||||||
Sbjct: 11 cgcctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcc 68
Query: 61 cgccttgcaccaagtgaatcggagccg 87
|||||||||||||||||||||||||||
Sbjct: 69 cgccttgcaccaagtgaatcggagccg 95
>55000_zma-miR168b:pmrd
Length = 104
Score = 95.6 bits (48), Expect = 5e-21
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 4 ctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgc 63
|||||||||||||||||||||||||||||||||||| | || | | ||| ||||||||||
Sbjct: 14 ctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgc 71
Query: 64 cttgcaccaagtgaatcggagccg 87
|||||| |||||||||||||||||
Sbjct: 72 cttgcatcaagtgaatcggagccg 95
>54637_sof-miR168b:pmrd
Length = 103
Score = 81.8 bits (41), Expect = 7e-17
Identities = 74/81 (91%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 7 gggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgcctt 66
|||||||||||| |||||||||||||||||||| | || | |||| | ||||||||||||
Sbjct: 17 gggctcgcttgg-gcagatcgggacccgccgcc-cggccgacgggac-ggatcccgcctt 73
Query: 67 gcaccaagtgaatcggagccg 87
|||||||||||||||||||||
Sbjct: 74 gcaccaagtgaatcggagccg 94
>54436_sbi-miR168:pmrd
Length = 106
Score = 79.8 bits (40), Expect = 3e-16
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 11 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 69
Query: 60 ccgccttgcaccaagtgaatcggagccg 87
||||||||||||||||||||| ||||||
Sbjct: 70 ccgccttgcaccaagtgaatccgagccg 97
>55002_zma-miR168m:pmrd
Length = 65
Score = 69.9 bits (35), Expect = 3e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 70
||||||||||||||||||||||||||||| | || | | ||| |||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgccttgcac 58
Query: 71 caagtga 77
|||||||
Sbjct: 59 caagtga 65
>54655_ssp-miR168:pmrd
Length = 65
Score = 69.9 bits (35), Expect = 3e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 70
||||||||||||||||||||||||||||| | || | | ||| |||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgccttgcac 58
Query: 71 caagtga 77
|||||||
Sbjct: 59 caagtga 65
>48661_hvv-miR168:pmrd
Length = 66
Score = 69.9 bits (35), Expect = 3e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 70
||||||||||||||||||||||| ||||| | | | | |||||||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggaccctccgcccgccccgac-gggccggatcccgccttgcac 59
Query: 71 caagtga 77
|||||||
Sbjct: 60 caagtga 66
>55001_zma-miR168c:pmrd
Length = 67
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacccgccgcc 39
||||||| |||||||||||||||||||||
Sbjct: 1 tcgcttgttgcagatcgggacccgccgcc 29
>51651_ptc-miR168b:pmrd
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggag 84
||||||||||||||| ||| ||||||||||
Sbjct: 106 ggatcccgccttgcatcaactgaatcggag 135
>51650_ptc-miR168a:pmrd
Length = 160
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggag 84
||||||||||||||| ||| ||||||||||
Sbjct: 130 ggatcccgccttgcatcaactgaatcggag 159
>48560_gma-miR168:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggag 84
||||||||||||||| ||| ||||||||||
Sbjct: 84 ggatcccgccttgcatcaactgaatcggag 113
>54802_vvi-miR168:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 gatcccgccttgcaccaagtgaatcggag 84
|||||||||||||| ||| ||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggag 127
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcgga 83
||||||||||||||| ||| |||||||||
Sbjct: 94 ggatcccgccttgcatcaactgaatcgga 122
>46957_ath-miR168a:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcgga 83
||||||||||||||| ||| |||||||||
Sbjct: 99 ggatcccgccttgcatcaactgaatcgga 127
>54388_rco-miR168:pmrd
Length = 156
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcg 81
||||||||||||||| ||| |||||||
Sbjct: 115 ggatcccgccttgcatcaactgaatcg 141
>48349_bna-miR168:pmrd
Length = 133
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 54 cggatcccgccttgcaccaagtgaatc 80
|||||||||||||| | ||||||||||
Sbjct: 93 cggatcccgccttgtatcaagtgaatc 119
