miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49025_osa-miR806b:pmrd
Length = 215
Score = 337 bits (170), Expect = 2e-93
Identities = 200/215 (93%)
Strand = Plus / Plus
Query: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattcnnn 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattcaaa 60
Query: 61 nnnntttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaatttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 120
Query: 121 atgtacacatataattttacatatttcacaaannnnnnnnaataagacgaacagtcaaga 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 atgtacacatataattttacatatttcacaaattttttttaataagacgaacagtcaaga 180
Query: 181 atgtgctaaaaagtcaacggtgtcaaacagtttga 215
|||||||||||||||||||||||||||||||||||
Sbjct: 181 atgtgctaaaaagtcaacggtgtcaaacagtttga 215
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 187 taaaaagtcaacggtgtcaaacagtttga 215
||||||||||||||||||||||| |||||
Sbjct: 29 taaaaagtcaacggtgtcaaacattttga 1
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 tcaaaatgtttgacaccgttgacttttta 29
||||| |||||||||||||||||||||||
Sbjct: 215 tcaaactgtttgacaccgttgacttttta 187
>49030_osa-miR806g:pmrd
Length = 240
Score = 226 bits (114), Expect = 5e-60
Identities = 187/215 (86%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattcnnn 60
|||||||||||||||||| |||||||||| |||||||||||| |||||| ||||||
Sbjct: 14 tcaaaatgtttgacaccgctgacttttta-gtacgtgtttgatcattcgttttattccaa 72
Query: 61 nnnntttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 aaaaattaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 132
Query: 121 atgtacacatataattttacatatttcacaaannnnnnnnaataagacgaacagtcaaga 180
|||||||||| || ||||||||||||||| || |||||||||||| |||||
Sbjct: 133 atgtacacatgtagttttacatatttcactaacttttttgaataagacgaacggtcaaac 192
Query: 181 atgtgctaaaaagtcaacggtgtcaaacagtttga 215
||||||||||||||||||||||||||||| |||||
Sbjct: 193 atgtgctaaaaagtcaacggtgtcaaacattttga 227
Score = 65.9 bits (33), Expect = 1e-11
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattc 57
|||||||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct: 227 tcaaaatgtttgacaccgttgacttttt-agcacatgtttgaccgttcgtcttattc 172
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 186 ctaaaaagtcaacggtgtcaaacagtttga 215
||||||||||| |||||||||||| |||||
Sbjct: 43 ctaaaaagtcagcggtgtcaaacattttga 14
>49024_osa-miR806a:pmrd
Length = 252
Score = 212 bits (107), Expect = 8e-56
Identities = 183/209 (87%), Gaps = 3/209 (1%)
Strand = Plus / Plus
Query: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattcnnn 60
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 22 tcaaaatgtttgacaccgttgactttttaaatacgtgtttgaccattcgtcttattcaaa 81
Query: 61 nnnntttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 120
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 82 aaa-tttaagtaattatttattcttttcata-catttgattcattgttaaatatactttc 139
Query: 121 atgtacacatataattttacatatttcacaaannnnnnnnaataagacgaacagtcaaga 180
||||||||||||| |||||| ||||||| ||| |||||||||||| || ||
Sbjct: 140 atgtacacatatagttttacgtatttca-aaaaaaaatttaataagacgaacggttaaac 198
Query: 181 atgtgctaaaaagtcaacggtgtcaaaca 209
|||||||||||||||||||||||||||||
Sbjct: 199 atgtgctaaaaagtcaacggtgtcaaaca 227
Score = 54.0 bits (27), Expect = 5e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 3 aaaatgtttgacaccgttgacttttta 29
|||||||||||||||||||||||||||
Sbjct: 231 aaaatgtttgacaccgttgacttttta 205
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 187 taaaaagtcaacggtgtcaaacagtttga 215
||||||||||||||||||||||| |||||
Sbjct: 50 taaaaagtcaacggtgtcaaacattttga 22
>49026_osa-miR806c:pmrd
Length = 270
Score = 196 bits (99), Expect = 5e-51
Identities = 180/209 (86%), Gaps = 2/209 (0%)
Strand = Plus / Plus
Query: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattcnnn 60
||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct: 31 tcaaaatgtttgacaccgttgacttttta-gtacgtatttgatcattcgtcttattcaaa 89
Query: 61 nnnntttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 120
|||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||
Sbjct: 90 aaa-tttaagtaattatttatttttttcatatcgtttgatttattgttaaatatactttc 148
Query: 121 atgtacacatataattttacatatttcacaaannnnnnnnaataagacgaacagtcaaga 180
||||||||||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 149 atgtacacatatagttttacatatttcataaaattttttgaataagacgaatggtcaaac 208
Query: 181 atgtgctaaaaagtcaacggtgtcaaaca 209
|||||||||||||||||||||||||||||
Sbjct: 209 atgtgctaaaaagtcaacggtgtcaaaca 237
Score = 67.9 bits (34), Expect = 3e-12
Identities = 50/54 (92%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 4 aaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattc 57
||||||||||||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 240 aaatgtttgacaccgttgacttttt-agcacatgtttgaccattcgtcttattc 188
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 186 ctaaaaagtcaacggtgtcaaacagtttga 215
|||||||||||||||||||||||| |||||
Sbjct: 60 ctaaaaagtcaacggtgtcaaacattttga 31
>49027_osa-miR806d:pmrd
Length = 271
Score = 188 bits (95), Expect = 1e-48
Identities = 179/209 (85%), Gaps = 2/209 (0%)
Strand = Plus / Plus
Query: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattcnnn 60
||||||||||||| |||||||| ||||||| |||||||||||| |||||| ||||||
Sbjct: 29 tcaaaatgtttgataccgttgagtttttaa-tacgtgtttgaccattcgttttattcaaa 87
Query: 61 nnnntttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 120
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 88 aaa-tttaaataattatttattcttttcatatcatttgattcattgttaaatatactttc 146
Query: 121 atgtacacatataattttacatatttcacaaannnnnnnnaataagacgaacagtcaaga 180
|| | |||||||| ||||||||||||||||| |||||||| ||| |||||
Sbjct: 147 atatgcacatatagttttacatatttcacaatttttttagaataagactaacggtcaaac 206
Query: 181 atgtgctaaaaagtcaacggtgtcaaaca 209
|||||||||||||||||||||||||||||
Sbjct: 207 atgtgctaaaaagtcaacggtgtcaaaca 235
Score = 54.0 bits (27), Expect = 5e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 3 aaaatgtttgacaccgttgacttttta 29
|||||||||||||||||||||||||||
Sbjct: 239 aaaatgtttgacaccgttgacttttta 213
>49028_osa-miR806e:pmrd
Length = 255
Score = 153 bits (77), Expect = 7e-38
Identities = 173/207 (83%), Gaps = 2/207 (0%)
Strand = Plus / Plus
Query: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattcnnn 60
|||||||||||||| |||||||||||||| | | |||||||| ||||||||||||
Sbjct: 22 tcaaaatgtttgacgccgttgacttttta-gcatatgtttgaccgttcgtcttattcaaa 80
Query: 61 nnnntttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 120
|||||||||||||| |||||||| |||||||| ||| ||||||||||||| |||
Sbjct: 81 aaa-tttaagtaattattaattcttttcttatcatttaatttattgttaaatatattttt 139
Query: 121 atgtacacatataattttacatatttcacaaannnnnnnnaataagacgaacagtcaaga 180
||||| ||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 140 atgtaggcatataattttacatatttcacaaaagtttttaaataagacgaacggtcaaac 199
Query: 181 atgtgctaaaaagtcaacggtgtcaaa 207
|||||||||||||||||||||||||||
Sbjct: 200 atgtgctaaaaagtcaacggtgtcaaa 226
Score = 61.9 bits (31), Expect = 2e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 161 aataagacgaacagtcaagaatgtgctaaaaagtcaacggtgtcaaacagtttga 215
|||||||||||| ||||| || ||||||||||||||||| |||||||| |||||
Sbjct: 76 aataagacgaacggtcaaacatatgctaaaaagtcaacggcgtcaaacattttga 22
Score = 50.1 bits (25), Expect = 7e-07
Identities = 47/53 (88%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 4 aaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttatt 56
|||| |||||||||||||||||||| || || |||||||| |||||||||||
Sbjct: 231 aaatatttgacaccgttgacttttt-agcacatgtttgaccgttcgtcttatt 180
>49031_osa-miR806h:pmrd
Length = 271
Score = 145 bits (73), Expect = 2e-35
Identities = 125/145 (86%)
Strand = Plus / Plus
Query: 65 tttaagtaattatttattctttttatatcatttgattcattgttaaatatactttcatgt 124
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 89 tttaagtaattattaattcttttcctatcatttgattcattgttaaatatatttttatgt 148
Query: 125 acacatataattttacatatttcacaaannnnnnnnaataagacgaacagtcaagaatgt 184
| ||||||||||||||||| ||||||| ||||||||||| ||||| ||||
Sbjct: 149 aggcatataattttacatatctcacaaaagtttttgaataagacgaatggtcaaacatgt 208
Query: 185 gctaaaaagtcaacggtgtcaaaca 209
|||||||||||||||||||||||||
Sbjct: 209 gctaaaaagtcaacggtgtcaaaca 233
Score = 67.9 bits (34), Expect = 3e-12
Identities = 50/54 (92%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 4 aaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattc 57
||||||||||||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 236 aaatgtttgacaccgttgacttttt-agcacatgtttgaccattcgtcttattc 184
Score = 42.1 bits (21), Expect = 2e-04
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 161 aataagacgaacagtcaagaatgtgctaaaaagtcaacggtgtcaaaca 209
|||||||||||| ||||| || || |||||||||||||| || |||||
Sbjct: 81 aataagacgaacggtcaaacatatgataaaaagtcaacggcgttaaaca 33
>49029_osa-miR806f:pmrd
Length = 241
Score = 143 bits (72), Expect = 6e-35
Identities = 112/128 (87%)
Strand = Plus / Plus
Query: 80 attctttttatatcatttgattcattgttaaatatactttcatgtacacatataatttta 139
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 92 attcttttcctatcatttgattcattgttaaatatattttcatgtaggcatataatttta 151
Query: 140 catatttcacaaannnnnnnnaataagacgaacagtcaagaatgtgctaaaaagtcaacg 199
||||||||| ||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 152 catatttcataaaagtttttgaataagacgaacagtcaaacatgtgctaaaaagtcaacg 211
Query: 200 gtgtcaaa 207
||||||||
Sbjct: 212 gtgtcaaa 219
Score = 60.0 bits (30), Expect = 7e-10
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 4 aaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattc 57
|||| |||||||||||||||||||| || || ||||||||| ||||||||||||
Sbjct: 224 aaatatttgacaccgttgacttttt-agcacatgtttgactgttcgtcttattc 172
Score = 50.1 bits (25), Expect = 7e-07
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 161 aataagacgaacagtcaagaatgtgctaaaaagtcaacggtgtcaaaca 209
|||||||||||| ||||| |||| |||||||||||||| ||||||||
Sbjct: 69 aataagacgaacggtcaaacatgtaataaaaagtcaacggcgtcaaaca 21
>48799_oru-miR806:pmrd
Length = 242
Score = 87.7 bits (44), Expect = 3e-18
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 65 tttaagtaattatttattctttttatatcatttgattcattgttaaatatactttcatgt 124
|||||||||||| | |||| ||| |||||||||||| ||||||||||||||||| || |
Sbjct: 78 tttaagtaattaataattcctttcctatcatttgatttattgttaaatatacttttatat 137
Query: 125 acacatataattttacatatttcacaaa 152
| ||||||| ||||| ||||||||||||
Sbjct: 138 atacatatagttttatatatttcacaaa 165
>49189_osa-miR1884a:pmrd
Length = 214
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tcaaaatgtttgacaccgttgacttttt 28
||||||||| ||||||||||||||||||
Sbjct: 213 tcaaaatgtatgacaccgttgacttttt 186
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 188 aaaaagtcaacggtgtcaaacagtttga 215
|||||||||||||||||| ||| |||||
Sbjct: 186 aaaaagtcaacggtgtcatacattttga 213
