miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49027_osa-miR806d:pmrd
Length = 271
Score = 496 bits (250), Expect = e-141
Identities = 264/271 (97%)
Strand = Plus / Plus
Query: 1 ctccctccgtccgaaatactccctcctttcaaaatgtttgataccgttgagtttttaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccctccgtccgaaatactccctcctttcaaaatgtttgataccgttgagtttttaata 60
Query: 61 cgtgtttgaccattcgttttattcaaaaaatttaaataattatttattcttttcatatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtgtttgaccattcgttttattcaaaaaatttaaataattatttattcttttcatatca 120
Query: 121 tttgattcattgttaaatatactttcatatgcacatatagttttacatatttcacaannn 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgattcattgttaaatatactttcatatgcacatatagttttacatatttcacaattt 180
Query: 181 nnnnagaataagactaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttagaataagactaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttta 240
Query: 241 aaacggagggagtataagggattttaggtgg 271
|||||||||||||||||||||||||||||||
Sbjct: 241 aaacggagggagtataagggattttaggtgg 271
Score = 56.0 bits (28), Expect = 1e-08
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 16 atactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccatt 74
||||||||||| ||| ||||||||||| |||||||| |||||| || ||||||||| ||
Sbjct: 255 atactccctccgttttaaaatgtttgacaccgttgactttttagcacatgtttgaccgtt 196
Query: 75 cgttttattcaaaaaa 90
|| |||||| |||||
Sbjct: 195 agtcttattctaaaaa 180
Score = 52.0 bits (26), Expect = 2e-07
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 186 gaataagactaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacg 245
|||||| || || ||||||||| || |||||| |||||||| ||||||||||| ||| |
Sbjct: 84 gaataaaacgaatggtcaaacacgtattaaaaactcaacggtatcaaacattttgaaa-g 26
Query: 246 gagggagtat 255
||||||||||
Sbjct: 25 gagggagtat 16
>49030_osa-miR806g:pmrd
Length = 240
Score = 280 bits (141), Expect = 5e-76
Identities = 214/238 (89%), Gaps = 2/238 (0%)
Strand = Plus / Plus
Query: 19 ctccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccattcgt 77
|||||||| ||||||||||||||| |||| ||| |||||| ||||||||||| |||||||
Sbjct: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattcgt 62
Query: 78 tttattc-aaaaaatttaaataattatttattcttttcatatcatttgattcattgttaa 136
||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 63 tttattccaaaaaaattaagtaattatttattctttttatatcatttgattcattgttaa 122
Query: 137 atatactttcatatgcacatatagttttacatatttcacaannnnnnnagaataagacta 196
|||||||||||| | ||||| |||||||||||||||||| | ||||||||| |
Sbjct: 123 atatactttcatgtacacatgtagttttacatatttcactaacttttttgaataagacga 182
Query: 197 acggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggagta 254
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 183 acggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttgaaacggagggagta 240
Score = 77.8 bits (39), Expect = 4e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 17 tactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccattc 75
|||||||||| ||||||||||||||| |||||||| |||||| || ||||||||| |||
Sbjct: 240 tactccctccgtttcaaaatgtttgacaccgttgactttttagcacatgtttgaccgttc 181
Query: 76 gttttattcaaaaaa 90
|| ||||||||||||
Sbjct: 180 gtcttattcaaaaaa 166
Score = 71.9 bits (36), Expect = 2e-13
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 201 tcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggag 252
||||||| || ||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 54 tcaaacacgtactaaaaagtcagcggtgtcaaacattttgaaacggagggag 3
>49024_osa-miR806a:pmrd
Length = 252
Score = 280 bits (141), Expect = 5e-76
Identities = 209/230 (90%), Gaps = 3/230 (1%)
Strand = Plus / Plus
Query: 27 tttcaaaatgtttgataccgttgagtttttaa-tacgtgtttgaccattcgttttattca 85
||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct: 20 tttcaaaatgtttgacaccgttgactttttaaatacgtgtttgaccattcgtcttattca 79
Query: 86 aaaaatttaaataattatttattcttttcatatcatttgattcattgttaaatatacttt 145
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 80 aaaaatttaagtaattatttattcttttcata-catttgattcattgttaaatatacttt 138
Query: 146 catatgcacatatagttttacatatttcacaannnnnnnagaataagactaacggtcaaa 205
||| | ||||||||||||||| ||||||| || |||||||| |||||| |||
Sbjct: 139 catgtacacatatagttttacgtatttca-aaaaaaaatttaataagacgaacggttaaa 197
Query: 206 catgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggagtat 255
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 catgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggagtat 247
Score = 71.9 bits (36), Expect = 2e-13
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 213 taaaaagtcaacggtgtcaaacattttaaaacggagggagtata 256
||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 50 taaaaagtcaacggtgtcaaacattttgaaacggagagagtata 7
Score = 54.0 bits (27), Expect = 6e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 14 aaatactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgacca 72
||||||||||||| ||| ||||||||||| |||||||| |||||| || ||||| |||
Sbjct: 249 aaatactccctccgttttaaaatgtttgacaccgttgactttttagcacatgtttaaccg 190
Query: 73 ttcgttttatt 83
||||| |||||
Sbjct: 189 ttcgtcttatt 179
>49026_osa-miR806c:pmrd
Length = 270
Score = 268 bits (135), Expect = 2e-72
Identities = 213/240 (88%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 17 tactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccattc 75
|||||||||| ||||||||||||||| |||||||| |||||| ||||| ||||| |||||
Sbjct: 18 tactccctccgtttcaaaatgtttgacaccgttgactttttagtacgtatttgatcattc 77
Query: 76 gttttattcaaaaaatttaaataattatttattcttttcatatcatttgattcattgtta 135
|| ||||||||||||||||| |||||||||||| |||||||||| ||||||| |||||||
Sbjct: 78 gtcttattcaaaaaatttaagtaattatttatttttttcatatcgtttgatttattgtta 137
Query: 136 aatatactttcatatgcacatatagttttacatatttcacaannnnnnnagaataagact 195
||||||||||||| | ||||||||||||||||||||||| || |||||||||
Sbjct: 138 aatatactttcatgtacacatatagttttacatatttcataaaattttttgaataagacg 197
Query: 196 aacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggagtat 255
|| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 198 aatggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttcgaaacggatggagtat 257
Score = 81.8 bits (41), Expect = 3e-16
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 186 gaataagactaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacg 245
||||||||| || | ||||| | || |||||||||||||||||||||||||||| |||||
Sbjct: 86 gaataagacgaatgatcaaatacgtactaaaaagtcaacggtgtcaaacattttgaaacg 27
Query: 246 gagggagta 254
|||||||||
Sbjct: 26 gagggagta 18
Score = 81.8 bits (41), Expect = 3e-16
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 14 aaatactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgacca 72
||||||||| ||| |||| |||||||||| |||||||| |||||| || ||||||||||
Sbjct: 259 aaatactccatccgtttcgaaatgtttgacaccgttgactttttagcacatgtttgacca 200
Query: 73 ttcgttttattcaaaaaattt 93
||||| |||||||||||||||
Sbjct: 199 ttcgtcttattcaaaaaattt 179
>49025_osa-miR806b:pmrd
Length = 215
Score = 222 bits (112), Expect = 1e-58
Identities = 185/209 (88%), Gaps = 2/209 (0%)
Strand = Plus / Plus
Query: 29 tcaaaatgtttgataccgttgagtttttaa-tacgtgtttgaccattcgttttattcaaa 87
||||||||||||| |||||||| ||||||| |||||||||||| |||||| |||||||||
Sbjct: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattcaaa 60
Query: 88 a-aatttaaataattatttattcttttcatatcatttgattcattgttaaatatactttc 146
| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 aaaatttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 120
Query: 147 atatgcacatatagttttacatatttcacaannnnnnnagaataagactaacggtcaaac 206
|| | |||||||| ||||||||||||||||| |||||||| ||| |||||
Sbjct: 121 atgtacacatataattttacatatttcacaaattttttttaataagacgaacagtcaaga 180
Query: 207 atgtgctaaaaagtcaacggtgtcaaaca 235
|||||||||||||||||||||||||||||
Sbjct: 181 atgtgctaaaaagtcaacggtgtcaaaca 209
Score = 54.0 bits (27), Expect = 6e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 213 taaaaagtcaacggtgtcaaacatttt 239
|||||||||||||||||||||||||||
Sbjct: 29 taaaaagtcaacggtgtcaaacatttt 3
>49031_osa-miR806h:pmrd
Length = 271
Score = 202 bits (102), Expect = 1e-52
Identities = 204/239 (85%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 17 tactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccattc 75
|||||||||| |||| |||||||| | ||||||| |||||| | ||||||||| |||
Sbjct: 14 tactccctccgtttcgaaatgtttaacgccgttgactttttatcatatgtttgaccgttc 73
Query: 76 gttttattcaaaaaatttaaataattatttattcttttcatatcatttgattcattgtta 135
|| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct: 74 gtcttattcaaaaaatttaagtaattattaattcttttcctatcatttgattcattgtta 133
Query: 136 aatatactttcatatgcacatatagttttacatatttcacaannnnnnnagaataagact 195
|||||| ||| || | |||||| |||||||||| |||||| |||||||||
Sbjct: 134 aatatatttttatgtaggcatataattttacatatctcacaaaagtttttgaataagacg 193
Query: 196 aacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggagta 254
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 194 aatggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttagaaacggagggagta 252
Score = 81.8 bits (41), Expect = 3e-16
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 186 gaataagactaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacg 245
||||||||| ||||||||||||| || |||||||||||||| || |||||||| |||||
Sbjct: 82 gaataagacgaacggtcaaacatatgataaaaagtcaacggcgttaaacatttcgaaacg 23
Query: 246 gagggagta 254
|||||||||
Sbjct: 22 gagggagta 14
Score = 75.8 bits (38), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 17 tactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccattc 75
|||||||||| |||| |||||||||| |||||||| |||||| || |||||||||||||
Sbjct: 252 tactccctccgtttctaaatgtttgacaccgttgactttttagcacatgtttgaccattc 193
Query: 76 gttttattcaaaaa 89
|| |||||||||||
Sbjct: 192 gtcttattcaaaaa 179
>49028_osa-miR806e:pmrd
Length = 255
Score = 196 bits (99), Expect = 6e-51
Identities = 204/240 (85%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 15 aatactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccat 73
|||||||| ||| ||||||||||||||| ||||||| |||||| | ||||||||| |
Sbjct: 7 aatactccatccgtttcaaaatgtttgacgccgttgactttttagcatatgtttgaccgt 66
Query: 74 tcgttttattcaaaaaatttaaataattatttattcttttcatatcatttgattcattgt 133
|||| ||||||||||||||||| |||||||| ||||||||| |||||||| ||| |||||
Sbjct: 67 tcgtcttattcaaaaaatttaagtaattattaattcttttcttatcatttaatttattgt 126
Query: 134 taaatatactttcatatgcacatatagttttacatatttcacaannnnnnnagaataaga 193
|||||||| ||| || | |||||| ||||||||||||||||| |||||||
Sbjct: 127 taaatatatttttatgtaggcatataattttacatatttcacaaaagtttttaaataaga 186
Query: 194 ctaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggagt 253
| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 187 cgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaatatttcgaaacggagggagt 246
Score = 99.6 bits (50), Expect = 1e-21
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 186 gaataagactaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacg 245
||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct: 77 gaataagacgaacggtcaaacatatgctaaaaagtcaacggcgtcaaacattttgaaacg 18
Query: 246 gagggagtat 255
|| |||||||
Sbjct: 17 gatggagtat 8
>49029_osa-miR806f:pmrd
Length = 241
Score = 190 bits (96), Expect = 4e-49
Identities = 204/241 (84%), Gaps = 1/241 (0%)
Strand = Plus / Plus
Query: 16 atactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccatt 74
||||||||||| |||| ||||||||| ||||||| |||||| ||| ||||||||| ||
Sbjct: 1 atactccctccgtttcggaatgtttgacgccgttgactttttattacatgtttgaccgtt 60
Query: 75 cgttttattcaaaaaatttaaataattatttattcttttcatatcatttgattcattgtt 134
||| ||||||||||||||| | | ||| | ||||||||| |||||||||||||||||||
Sbjct: 61 cgtcttattcaaaaaattttgacacttaataattcttttcctatcatttgattcattgtt 120
Query: 135 aaatatactttcatatgcacatatagttttacatatttcacaannnnnnnagaataagac 194
||||||| |||||| | |||||| |||||||||||||| || |||||||||
Sbjct: 121 aaatatattttcatgtaggcatataattttacatatttcataaaagtttttgaataagac 180
Query: 195 taacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggagta 254
||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 181 gaacagtcaaacatgtgctaaaaagtcaacggtgtcaaatatttcgaaacggagggagta 240
Query: 255 t 255
|
Sbjct: 241 t 241
Score = 83.8 bits (42), Expect = 6e-17
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 186 gaataagactaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacg 245
||||||||| ||||||||||||||| |||||||||||||| |||||||||| |||||
Sbjct: 70 gaataagacgaacggtcaaacatgtaataaaaagtcaacggcgtcaaacattccgaaacg 11
Query: 246 gagggagtat 255
||||||||||
Sbjct: 10 gagggagtat 1
Score = 54.0 bits (27), Expect = 6e-08
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 16 atactccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccatt 74
||||||||||| |||| |||| ||||| |||||||| |||||| || |||||||| ||
Sbjct: 241 atactccctccgtttcgaaatatttgacaccgttgactttttagcacatgtttgactgtt 182
Query: 75 cgttttattcaaaaa 89
||| |||||||||||
Sbjct: 181 cgtcttattcaaaaa 167
>48799_oru-miR806:pmrd
Length = 242
Score = 123 bits (62), Expect = 8e-29
Identities = 125/147 (85%), Gaps = 1/147 (0%)
Strand = Plus / Plus
Query: 65 tttgaccattcgttttattcaaaa-aatttaaataattatttattcttttcatatcattt 123
||||||| ||||| |||||||||| ||||||| |||||| | |||| |||| ||||||||
Sbjct: 51 tttgaccgttcgtcttattcaaaaaaatttaagtaattaataattcctttcctatcattt 110
Query: 124 gattcattgttaaatatactttcatatgcacatatagttttacatatttcacaannnnnn 183
|||| ||||||||||||||||| |||| ||||||||||||| |||||||||||
Sbjct: 111 gatttattgttaaatatacttttatatatacatatagttttatatatttcacaaaaattt 170
Query: 184 nagaataagactaacggtcaaacatgt 210
||||||||| |||||||||||||||
Sbjct: 171 ttgaataagacgaacggtcaaacatgt 197
Score = 44.1 bits (22), Expect = 6e-05
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 186 gaataagactaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttt 239
||||||||| |||||||||| || | ||||||||||||| |||||| |||||
Sbjct: 70 gaataagacgaacggtcaaatatatttaaaaaagtcaacggcgtcaaatatttt 17
>49071_osa-miR818e:pmrd
Length = 225
Score = 54.0 bits (27), Expect = 6e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 63 tgtttgaccattcgttttattcaaaaaattt 93
|||||||||| ||||||||||||||||||||
Sbjct: 182 tgtttgaccactcgttttattcaaaaaattt 152
>48794_oni-miR812:pmrd
Length = 172
Score = 50.1 bits (25), Expect = 9e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 63 tgtttgaccattcgttttattcaaaaaatttaaataattat 103
||||||||||||||| ||||||||||| |||| |||||||
Sbjct: 158 tgtttgaccattcgtcttattcaaaaactttatgtaattat 118
Score = 48.1 bits (24), Expect = 4e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 tgtttgaccattcgttttattcaaaaaattta 94
||||||||||||||||||||| ||||| ||||
Sbjct: 15 tgtttgaccattcgttttatttaaaaatttta 46
Score = 40.1 bits (20), Expect = 9e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 186 gaataagactaacggtcaaacatgtgctaaaaagtc 221
||||||||| || ||||||||||||| ||||||||
Sbjct: 137 gaataagacgaatggtcaaacatgtgagaaaaagtc 172
>49189_osa-miR1884a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 64 gtttgaccattcgttttattcaaaaa 89
|||||||||||||| |||||||||||
Sbjct: 36 gtttgaccattcgtcttattcaaaaa 61
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 214 aaaaagtcaacggtgtcaaacatttt 239
|||||||||||||||||| |||||||
Sbjct: 186 aaaaagtcaacggtgtcatacatttt 211
Score = 40.1 bits (20), Expect = 9e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 64 gtttgaccattcgttttattcaaaaaatttaaataa 99
|||||||||||| | |||||||||||| ||| ||||
Sbjct: 178 gtttgaccattcatcttattcaaaaaagttatataa 143
>49422_osa-miRf10207-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 9e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 63 tgtttgaccattcgttttattcaaaaaa 90
|||||||||| |||| ||||||||||||
Sbjct: 154 tgtttgaccactcgtcttattcaaaaaa 127
