miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49030_osa-miR806g:pmrd
Length = 240
Score = 434 bits (219), Expect = e-122
Identities = 233/240 (97%)
Strand = Plus / Plus
Query: 1 tgctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattc 60
Query: 61 gttttattccnnnnnnnttaagtaattatttattctttttatatcatttgattcattgtt 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttttattccaaaaaaattaagtaattatttattctttttatatcatttgattcattgtt 120
Query: 121 aaatatactttcatgtacacatgtagttttacatatttcactaacttttttgaataagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatatactttcatgtacacatgtagttttacatatttcactaacttttttgaataagac 180
Query: 181 gaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttgaaacggagggagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttgaaacggagggagta 240
Score = 89.7 bits (45), Expect = 9e-19
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 166 ttttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttt 225
||||| |||||| ||||| | ||||||| || ||||||||||| ||||||||||||||||
Sbjct: 75 tttttggaataaaacgaatgatcaaacacgtactaaaaagtcagcggtgtcaaacatttt 16
Query: 226 gaaacggagggag 238
|||||||||||||
Sbjct: 15 gaaacggagggag 3
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattcgt 62
||||||||||||||||||||||||||||| ||||||||||| || ||||||| | |||||
Sbjct: 238 ctccctccgtttcaaaatgtttgacaccgttgactttttagcacatgtttgaccgttcgt 179
Query: 63 tttattc 69
||||||
Sbjct: 178 cttattc 172
>49026_osa-miR806c:pmrd
Length = 270
Score = 303 bits (153), Expect = 3e-83
Identities = 216/238 (90%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattcgt 62
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 20 ctccctccgtttcaaaatgtttgacaccgttgactttttagtacgtatttgatcattcgt 79
Query: 63 tttattccnnnnnnnttaagtaattatttattctttttatatcatttgattcattgttaa 122
|||||| ||||||||||||||||| |||| ||||| ||||||| ||||||||
Sbjct: 80 cttattc-aaaaaatttaagtaattatttatttttttcatatcgtttgatttattgttaa 138
Query: 123 atatactttcatgtacacatgtagttttacatatttcactaacttttttgaataagacga 182
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 139 atatactttcatgtacacatatagttttacatatttcataaaattttttgaataagacga 198
Query: 183 acggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttgaaacggagggagta 240
| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 199 atggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttcgaaacggatggagta 256
Score = 109 bits (55), Expect = 1e-24
Identities = 70/75 (93%)
Strand = Plus / Minus
Query: 166 ttttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttt 225
|||||||||||||||||| | ||||| | || ||||||||||||||||||||||||||||
Sbjct: 92 ttttttgaataagacgaatgatcaaatacgtactaaaaagtcaacggtgtcaaacatttt 33
Query: 226 gaaacggagggagta 240
|||||||||||||||
Sbjct: 32 gaaacggagggagta 18
Score = 77.8 bits (39), Expect = 4e-15
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattcgt 62
|||| |||||||| ||||||||||||||| ||||||||||| || ||||||| |||||||
Sbjct: 254 ctccatccgtttcgaaatgtttgacaccgttgactttttagcacatgtttgaccattcgt 195
Query: 63 tttattc 69
||||||
Sbjct: 194 cttattc 188
>49027_osa-miR806d:pmrd
Length = 271
Score = 272 bits (137), Expect = 1e-73
Identities = 213/238 (89%), Gaps = 2/238 (0%)
Strand = Plus / Plus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattcgt 62
|||||||| ||||||||||||||| |||| ||| |||||| ||||||||||| |||||||
Sbjct: 19 ctccctcc-tttcaaaatgtttgataccgttgagtttttaatacgtgtttgaccattcgt 77
Query: 63 tttattccnnnnnnnttaagtaattatttattctttttatatcatttgattcattgttaa 122
||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 78 tttattc-aaaaaatttaaataattatttattcttttcatatcatttgattcattgttaa 136
Query: 123 atatactttcatgtacacatgtagttttacatatttcactaacttttttgaataagacga 182
|||||||||||| | ||||| |||||||||||||||||| | ||||| ||||||||| |
Sbjct: 137 atatactttcatatgcacatatagttttacatatttcacaatttttttagaataagacta 196
Query: 183 acggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttgaaacggagggagta 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 197 acggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggagta 254
Score = 77.8 bits (39), Expect = 4e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 166 ttttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttt 225
|||||||||||| ||||| ||||||||| || |||||| |||||||| |||||||||||
Sbjct: 90 ttttttgaataaaacgaatggtcaaacacgtattaaaaactcaacggtatcaaacatttt 31
Query: 226 gaaacggagggagta 240
|||| ||||||||||
Sbjct: 30 gaaa-ggagggagta 17
Score = 71.9 bits (36), Expect = 2e-13
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttga 54
|||||||||||| |||||||||||||||| ||||||||||| || |||||||
Sbjct: 252 ctccctccgttttaaaatgtttgacaccgttgactttttagcacatgtttga 201
>49025_osa-miR806b:pmrd
Length = 215
Score = 258 bits (130), Expect = 2e-69
Identities = 193/215 (89%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 14 tcaaaatgtttgacaccgctgacttttta-gtacgtgtttgatcattcgttttattccnn 72
|||||||||||||||||| |||||||||| |||||||||||| |||||| ||||||
Sbjct: 1 tcaaaatgtttgacaccgttgactttttaagtacgtgtttgactattcgtcttattcaaa 60
Query: 73 nnnnnttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaatttaagtaattatttattctttttatatcatttgattcattgttaaatatactttc 120
Query: 133 atgtacacatgtagttttacatatttcactaacttttttgaataagacgaacggtcaaac 192
|||||||||| || ||||||||||||||| || |||||| |||||||||||| |||||
Sbjct: 121 atgtacacatataattttacatatttcacaaattttttttaataagacgaacagtcaaga 180
Query: 193 atgtgctaaaaagtcaacggtgtcaaacattttga 227
||||||||||||||||||||||||||||| |||||
Sbjct: 181 atgtgctaaaaagtcaacggtgtcaaacagtttga 215
Score = 77.8 bits (39), Expect = 4e-15
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 166 ttttttgaataagacgaacggtcaaacatgtgct-aaaaagtcaacggtgtcaaacattt 224
|||||||||||||||||| |||||||| || || |||||||||||||||||||||||||
Sbjct: 63 ttttttgaataagacgaatagtcaaacacgtacttaaaaagtcaacggtgtcaaacattt 4
Query: 225 tga 227
|||
Sbjct: 3 tga 1
Score = 44.1 bits (22), Expect = 5e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 14 tcaaaatgtttgacaccgctgactttttag 43
||||| |||||||||||| |||||||||||
Sbjct: 215 tcaaactgtttgacaccgttgactttttag 186
>49024_osa-miR806a:pmrd
Length = 252
Score = 242 bits (122), Expect = 1e-64
Identities = 209/235 (88%), Gaps = 4/235 (1%)
Strand = Plus / Plus
Query: 7 ctccgtttcaaaatgtttgacaccgctgactttttag-tacgtgtttgatcattcgtttt 65
||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||
Sbjct: 15 ctccgtttcaaaatgtttgacaccgttgactttttaaatacgtgtttgaccattcgtctt 74
Query: 66 attccnnnnnnnttaagtaattatttattctttttatatcatttgattcattgttaaata 125
|||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 75 attc-aaaaaatttaagtaattatttattcttttcata-catttgattcattgttaaata 132
Query: 126 tactttcatgtacacatgtagttttacatatttcactaacttttttgaataagacgaacg 185
||||||||||||||||| ||||||||| ||||||| || ||| |||||||||||||
Sbjct: 133 tactttcatgtacacatatagttttacgtatttcaaaaaaaaattt-aataagacgaacg 191
Query: 186 gtcaaacatgtgctaaaaagtcaacggtgtcaaacattttgaaacggagggagta 240
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 192 gttaaacatgtgctaaaaagtcaacggtgtcaaacattttaaaacggagggagta 246
Score = 95.6 bits (48), Expect = 1e-20
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 166 ttttttgaataagacgaacggtcaaacatgtgct-aaaaagtcaacggtgtcaaacattt 224
|||||||||||||||||| ||||||||| || | |||||||||||||||||||||||||
Sbjct: 84 ttttttgaataagacgaatggtcaaacacgtatttaaaaagtcaacggtgtcaaacattt 25
Query: 225 tgaaacggagggagta 240
|||||||||| |||||
Sbjct: 24 tgaaacggagagagta 9
Score = 67.9 bits (34), Expect = 3e-12
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgttt 52
|||||||||||| |||||||||||||||| ||||||||||| || |||||
Sbjct: 244 ctccctccgttttaaaatgtttgacaccgttgactttttagcacatgttt 195
>49031_osa-miR806h:pmrd
Length = 271
Score = 208 bits (105), Expect = 1e-54
Identities = 204/238 (85%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattcgt 62
||||||||||||| |||||||| || ||| |||||||||| | ||||||| | |||||
Sbjct: 16 ctccctccgtttcgaaatgtttaacgccgttgactttttatcatatgtttgaccgttcgt 75
Query: 63 tttattccnnnnnnnttaagtaattatttattctttttatatcatttgattcattgttaa 122
|||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 76 cttattc-aaaaaatttaagtaattattaattcttttcctatcatttgattcattgttaa 134
Query: 123 atatactttcatgtacacatgtagttttacatatttcactaacttttttgaataagacga 182
||||| ||| ||||| ||| || |||||||||| |||| || ||||||||||||||||
Sbjct: 135 atatatttttatgtaggcatataattttacatatctcacaaaagtttttgaataagacga 194
Query: 183 acggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttgaaacggagggagta 240
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 195 atggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttagaaacggagggagta 252
Score = 109 bits (55), Expect = 1e-24
Identities = 70/75 (93%)
Strand = Plus / Minus
Query: 166 ttttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttt 225
||||||||||||||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 88 ttttttgaataagacgaacggtcaaacatatgataaaaagtcaacggcgttaaacatttc 29
Query: 226 gaaacggagggagta 240
|||||||||||||||
Sbjct: 28 gaaacggagggagta 14
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattcgt 62
||||||||||||| ||||||||||||||| ||||||||||| || ||||||| |||||||
Sbjct: 250 ctccctccgtttctaaatgtttgacaccgttgactttttagcacatgtttgaccattcgt 191
Query: 63 tttattc 69
||||||
Sbjct: 190 cttattc 184
>49028_osa-miR806e:pmrd
Length = 255
Score = 206 bits (104), Expect = 6e-54
Identities = 203/237 (85%), Gaps = 1/237 (0%)
Strand = Plus / Plus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattcgt 62
|||| |||||||||||||||||||| ||| ||||||||||| | ||||||| | |||||
Sbjct: 11 ctccatccgtttcaaaatgtttgacgccgttgactttttagcatatgtttgaccgttcgt 70
Query: 63 tttattccnnnnnnnttaagtaattatttattctttttatatcatttgattcattgttaa 122
|||||| ||||||||||||| |||||||| |||||||| ||| ||||||||
Sbjct: 71 cttattc-aaaaaatttaagtaattattaattcttttcttatcatttaatttattgttaa 129
Query: 123 atatactttcatgtacacatgtagttttacatatttcactaacttttttgaataagacga 182
||||| ||| ||||| ||| || ||||||||||||||| || ||||| ||||||||||
Sbjct: 130 atatatttttatgtaggcatataattttacatatttcacaaaagtttttaaataagacga 189
Query: 183 acggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttgaaacggagggagt 239
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 190 acggtcaaacatgtgctaaaaagtcaacggtgtcaaatatttcgaaacggagggagt 246
Score = 125 bits (63), Expect = 2e-29
Identities = 72/75 (96%)
Strand = Plus / Minus
Query: 166 ttttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttt 225
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 83 ttttttgaataagacgaacggtcaaacatatgctaaaaagtcaacggcgtcaaacatttt 24
Query: 226 gaaacggagggagta 240
|||||||| ||||||
Sbjct: 23 gaaacggatggagta 9
Score = 67.9 bits (34), Expect = 3e-12
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttgatcattcgt 62
||||||||||||| |||| |||||||||| ||||||||||| || ||||||| | |||||
Sbjct: 245 ctccctccgtttcgaaatatttgacaccgttgactttttagcacatgtttgaccgttcgt 186
Query: 63 tttatt 68
|||||
Sbjct: 185 cttatt 180
>49029_osa-miR806f:pmrd
Length = 241
Score = 184 bits (93), Expect = 2e-47
Identities = 135/149 (90%)
Strand = Plus / Plus
Query: 92 attctttttatatcatttgattcattgttaaatatactttcatgtacacatgtagtttta 151
|||||||| |||||||||||||||||||||||||| ||||||||| ||| || |||||
Sbjct: 92 attcttttcctatcatttgattcattgttaaatatattttcatgtaggcatataatttta 151
Query: 152 catatttcactaacttttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacg 211
||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 152 catatttcataaaagtttttgaataagacgaacagtcaaacatgtgctaaaaagtcaacg 211
Query: 212 gtgtcaaacattttgaaacggagggagta 240
|||||||| |||| |||||||||||||||
Sbjct: 212 gtgtcaaatatttcgaaacggagggagta 240
Score = 109 bits (55), Expect = 1e-24
Identities = 70/75 (93%)
Strand = Plus / Minus
Query: 166 ttttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttt 225
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 76 ttttttgaataagacgaacggtcaaacatgtaataaaaagtcaacggcgtcaaacattcc 17
Query: 226 gaaacggagggagta 240
|||||||||||||||
Sbjct: 16 gaaacggagggagta 2
Score = 63.9 bits (32), Expect = 5e-11
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 3 ctccctccgtttcaaaatgtttgacaccgctgactttttagtacgtgtttga 54
||||||||||||| |||| |||||||||| ||||||||||| || |||||||
Sbjct: 238 ctccctccgtttcgaaatatttgacaccgttgactttttagcacatgtttga 187
>48799_oru-miR806:pmrd
Length = 242
Score = 125 bits (63), Expect = 2e-29
Identities = 105/119 (88%)
Strand = Plus / Plus
Query: 78 ttaagtaattatttattctttttatatcatttgattcattgttaaatatactttcatgta 137
||||||||||| | |||| ||| |||||||||||| ||||||||||||||||| || ||
Sbjct: 79 ttaagtaattaataattcctttcctatcatttgatttattgttaaatatacttttatata 138
Query: 138 cacatgtagttttacatatttcactaacttttttgaataagacgaacggtcaaacatgt 196
|||| |||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 139 tacatatagttttatatatttcacaaaaatttttgaataagacgaacggtcaaacatgt 197
Score = 69.9 bits (35), Expect = 9e-13
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 166 ttttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacatttt 225
|||||||||||||||||||||||||| || | ||||||||||||| |||||| |||||
Sbjct: 76 ttttttgaataagacgaacggtcaaatatatttaaaaaagtcaacggcgtcaaatatttt 17
Query: 226 gaaacggagggagta 240
| | ||||||||||
Sbjct: 16 gggatggagggagta 2
>49189_osa-miR1884a:pmrd
Length = 214
Score = 63.9 bits (32), Expect = 5e-11
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 162 taacttttttgaataagacgaacggtcaaac-atgtgctaaaaagtcaacggtgtcaaac 220
|||||||||||||||||| ||| |||||||| | ||| |||||||||||||||||| ||
Sbjct: 148 taacttttttgaataagatgaatggtcaaacgttatgc-aaaaagtcaacggtgtcatac 206
Query: 221 attttgaa 228
||||||||
Sbjct: 207 attttgaa 214
Score = 50.1 bits (25), Expect = 8e-07
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 167 tttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttg 226
||||||||||||||||| |||||||| | | |||||||||||| |||| ||||||||
Sbjct: 61 tttttgaataagacgaatggtcaaacgttgtatgaaaagtcaacggcgtcacacattttg 2
Query: 227 a 227
|
Sbjct: 1 a 1
>48794_oni-miR812:pmrd
Length = 172
Score = 58.0 bits (29), Expect = 3e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 167 tttttgaataagacgaacggtcaaacatgtgctaaaaagtc 207
||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 132 tttttgaataagacgaatggtcaaacatgtgagaaaaagtc 172
Score = 42.1 bits (21), Expect = 2e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 167 tttttgaataagacgaacggtcaaacatgtgctaaaaagtc 207
||||| ||||| ||||| ||||||||||||| ||||||||
Sbjct: 41 tttttaaataaaacgaatggtcaaacatgtgagaaaaagtc 1
>49422_osa-miRf10207-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 166 ttttttgaataagacgaacggtcaaaca 193
||||||||||||||||| |||||||||
Sbjct: 127 ttttttgaataagacgagtggtcaaaca 154
>49049_osa-miR812b:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 173 aataagacgaacggtcaaac 192
||||||||||||||||||||
Sbjct: 34 aataagacgaacggtcaaac 15
