miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49033_osa-miR807b:pmrd
Length = 146
Score = 289 bits (146), Expect = 3e-79
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1 gaattgattcacctgtgatatggcgtggctgttccacttatgatgaggacatggcatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaattgattcacctgtgatatggcgtggctgttccacttatgatgaggacatggcatcct 60
Query: 61 attaccagccatcgcacaaaattaataggatgccatattctcgtcctaggtgtaacaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attaccagccatcgcacaaaattaataggatgccatattctcgtcctaggtgtaacaacc 120
Query: 121 acgtcatctcacaggtgaatccattt 146
||||||||||||||||||||||||||
Sbjct: 121 acgtcatctcacaggtgaatccattt 146
Score = 46.1 bits (23), Expect = 7e-06
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 83 taataggatgccatattctcgtcctaggtgtaacaaccacgtcatctcacaggtgaatc 141
|||||||||||||| | ||| || || ||| |||| ||||| ||| |||||||||||||
Sbjct: 64 taataggatgccatgtcctcatcataagtggaacagccacgccatatcacaggtgaatc 6
Score = 46.1 bits (23), Expect = 7e-06
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 6 gattcacctgtgatatggcgtggctgttccacttatgatgaggacatggcatcctatta 64
||||||||||||| ||| ||||| |||| ||| || || ||| | ||||||||||||||
Sbjct: 141 gattcacctgtgagatgacgtggttgttacacctaggacgagaatatggcatcctatta 83
>49034_osa-miR807c:pmrd
Length = 184
Score = 153 bits (77), Expect = 4e-38
Identities = 128/145 (88%)
Strand = Plus / Plus
Query: 1 gaattgattcacctgtgatatggcgtggctgttccacttatgatgaggacatggcatcct 60
|||| |||||||| |||||||| ||||| ||||||||||| || || || |||||||||
Sbjct: 20 gaatggattcacccgtgatatgacgtggttgttccacttaggacaagaacgtggcatcct 79
Query: 61 attaccagccatcgcacaaaattaataggatgccatattctcgtcctaggtgtaacaacc 120
||||| |||||||||||||||| |||||||||||| | ||| || |||||| |||||||
Sbjct: 80 attacaagccatcgcacaaaatcaataggatgccacgtcctcatcataggtggaacaacc 139
Query: 121 acgtcatctcacaggtgaatccatt 145
|||||||||||||||||||||||||
Sbjct: 140 acgtcatctcacaggtgaatccatt 164
Score = 77.8 bits (39), Expect = 2e-15
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 1 gaattgattcacctgtgatatggcgtggctgttccacttatgatgaggacatggcatcct 60
|||| ||||||||||||| ||| ||||| |||||||| |||||||||||| |||||||||
Sbjct: 165 gaatggattcacctgtgagatgacgtggttgttccacctatgatgaggacgtggcatcct 106
Query: 61 att 63
|||
Sbjct: 105 att 103
Score = 69.9 bits (35), Expect = 5e-13
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 83 taataggatgccatattctcgtcctaggtgtaacaaccacgtcatctcacaggtgaatcc 142
||||||||||||| |||| |||||| ||| |||||||||||||| |||| |||||||||
Sbjct: 83 taataggatgccacgttcttgtcctaagtggaacaaccacgtcatatcacgggtgaatcc 24
Query: 143 att 145
|||
Sbjct: 23 att 21
>49032_osa-miR807a:pmrd
Length = 252
Score = 103 bits (52), Expect = 4e-23
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 54 gcatcctattaccagccatcgcacaaaattaataggatgccatattctcgtcctaggtgt 113
|||||||||||||||||||| || ||||||||||||||||| | ||| ||||||||
Sbjct: 145 gcatcctattaccagccatctcatgaaattaataggatgccacgtcctcatcctaggtaa 204
Query: 114 aacaaccacgtcatctcacaggtgaatccatt 145
|| |||||||||||||||||||||||||||||
Sbjct: 205 aataaccacgtcatctcacaggtgaatccatt 236
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 54 gcatcctattaccagccatcgcacaaaattaataggatgcca 95
|||||||||||||||||||| || |||||||||||||||||
Sbjct: 68 gcatcctattaccagccatctcatgaaattaataggatgcca 109
Score = 48.1 bits (24), Expect = 2e-06
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 1 gaattgattcacctgtgatatggcgtggctgttccacttatgatgaggacatggcatcct 60
|||| ||||||||||||| ||| ||||| | || || || ||||||||| |||||||||
Sbjct: 237 gaatggattcacctgtgagatgacgtggttattttacctaggatgaggacgtggcatcct 178
Query: 61 atta 64
||||
Sbjct: 177 atta 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 54/64 (84%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 83 taataggatgccatattctcgtcctaggtgtaacaaccacgtcatctcacaggtgaatcc 142
|||||||||| ||| | | |||||| ||| |||||||| |||||||||| ||||||||
Sbjct: 78 taataggatg-catgtcattgtcctatgtggaacaaccaagtcatctcacgggtgaatct 20
Query: 143 attt 146
||||
Sbjct: 19 attt 16
>49817_osa-miRf10602-akr:pmrd
Length = 88
Score = 101 bits (51), Expect = 1e-22
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 45 gaggacatggcatcctattaccagccatcgcacaaaattaataggatgcca 95
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 gaggacatggcatcctattaccagccatcgcacaaaattaataggatgcca 66
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 83 taataggatgccatattctcgtcctaggtgtaaca 117
|||||||||||||| | ||||||||||||| ||||
Sbjct: 35 taataggatgccatgtcctcgtcctaggtgaaaca 1
>50896_osa-miRf11681-akr:pmrd
Length = 87
Score = 93.7 bits (47), Expect = 3e-20
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 42 gatgaggacatggcatcctattaccagccatcgcacaaaattaataggatgccatattct 101
||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 75 gatgaggacatagcatcctattaccagccatcgcacgaaattaataggatgccacatcct 16
Query: 102 cgtccta 108
| |||||
Sbjct: 15 catccta 9
>49914_osa-miRf10699-akr:pmrd
Length = 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 42 gatgaggacatggcatcctattaccagccatcgcacaaaattaataggatgcca 95
||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 75 gatgaggacatggcatcctatcaccagccatcgcacgaaattaataggatgcca 22
>49913_osa-miRf10698-akr:pmrd
Length = 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 42 gatgaggacatggcatcctattaccagccatcgcacaaaattaataggatgcca 95
||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 75 gatgaggacatggcatcctatcaccagccatcgcacgaaattaataggatgcca 22
>49891_osa-miRf10676-akr:pmrd
Length = 92
Score = 89.7 bits (45), Expect = 5e-19
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 45 gaggacatggcatcctattaccagccatcgcacaaaattaataggatgc 93
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 75 gaggacatggcatcctattaccagccatcgcacgaaattaataggatgc 27
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 83 taataggatgccatattctcgtcctaggtgtaacaac 119
|||||||||||||| | |||||||||| || ||||||
Sbjct: 56 taataggatgccatgtcctcgtcctagttgaaacaac 92
>50644_osa-miRf11429-akr:pmrd
Length = 86
Score = 87.7 bits (44), Expect = 2e-18
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 42 gatgaggacatggcatcctattaccagccatcgcacaaaattaataggatgc 93
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 75 gatgaggacatggcatcctattaccagccatcgcatgaaattaataggatgc 24
>50079_osa-miRf10864-akr:pmrd
Length = 86
Score = 83.8 bits (42), Expect = 3e-17
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 46 aggacatggcatcctattaccagccatcgcacaaaattaataggatgcca 95
|||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 71 aggacatggcatcctattaccagccatcacacaaaattaacaggatgcca 22
>49217_osa-miRf10002-akr:pmrd
Length = 87
Score = 83.8 bits (42), Expect = 3e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 45 gaggacatggcatcctattaccagccatcgcac-aaaattaataggatgccatattctcg 103
||||| ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct: 15 gaggatatggcatcctattactagccatcgcacgaaaattaataggatgccacattctca 74
Query: 104 tcctag 109
||||||
Sbjct: 75 tcctag 80
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 83 taataggatgccatattctcgtcctaggtg 112
|||||||||||||||| |||||||||||||
Sbjct: 34 taataggatgccatatcctcgtcctaggtg 5
>49904_osa-miRf10689-akr:pmrd
Length = 86
Score = 79.8 bits (40), Expect = 5e-16
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 45 gaggacatggcatcctattaccagccatcgcacaaaattaataggatgccat 96
||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 72 gaggaaatggcatcctattaccagccatcacacgaaattaataggatgccat 21
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 gatgaggacatggcatcctatta 64
|||||||||||||||||||||||
Sbjct: 12 gatgaggacatggcatcctatta 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 taataggatgccatattctcgtcctaggtg 112
|||||||||||||| | |||||||||||||
Sbjct: 53 taataggatgccatttcctcgtcctaggtg 82
>49903_osa-miRf10688-akr:pmrd
Length = 88
Score = 79.8 bits (40), Expect = 5e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 45 gaggacatggcatcctattaccagccatcgcacaaaattaataggatgccat 96
||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 16 gaggaaatggcatcctattaccagccatcacacgaaattaataggatgccat 67
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 83 taataggatgccatattctcgtcctaggtgtaaca 117
|||||||||||||| | ||||||||||||| ||||
Sbjct: 35 taataggatgccatttcctcgtcctaggtgaaaca 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 42 gatgaggacatggcatcctatta 64
|||||||||||||||||||||||
Sbjct: 76 gatgaggacatggcatcctatta 54
>50176_osa-miRf10961-akr:pmrd
Length = 86
Score = 77.8 bits (39), Expect = 2e-15
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 49 acatggcatcctattaccagccatcgcacaaaattaataggatgcca 95
|||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 68 acatggcatcctattatcagccatcgcacgaaattaataggatgcca 22
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 83 taataggatgccatattctcgtcctaggtg 112
|||||||||||||| |||||||||||||||
Sbjct: 53 taataggatgccatgttctcgtcctaggtg 82
>50133_osa-miRf10918-akr:pmrd
Length = 88
Score = 77.8 bits (39), Expect = 2e-15
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 45 gaggacatggcatcctattaccagccatcgcacaaaattaataggatgcca 95
|||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 73 gaggacttggcatcctattaccagcaatcgcacgaaattaataggatgcca 23
>50934_osa-miRf11719-akr:pmrd
Length = 86
Score = 75.8 bits (38), Expect = 8e-15
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 55 catcctattaccagccatcgcacaaaattaataggatgccatattctcgtcctaggtg 112
||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||
Sbjct: 62 catcctattaccagccatcgcacgaaattaataggatgccacgtcctcatcctaggtg 5
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 31 gttccacttatgatgaggacatggcatcctatta 64
||||||| || ||||||||| |||||||||||||
Sbjct: 1 gttccacctaggatgaggacgtggcatcctatta 34
>50500_osa-miRf11285-akr:pmrd
Length = 98
Score = 69.9 bits (35), Expect = 5e-13
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 45 gaggacatggcatcctattaccagccatcgcacaaaattaataggatgcca 95
||||||||||||||||||||| |||||| |||| ||||||||| |||||||
Sbjct: 78 gaggacatggcatcctattactagccattgcacgaaattaatatgatgcca 28
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 83 taataggatgccatattctcgtcctaggtgtaacaaccac 122
|||||||||||||| | ||||||||||||| |||||||||
Sbjct: 59 taataggatgccatgtcctcgtcctaggtgaaacaaccac 98
>50244_osa-miRf11029-akr:pmrd
Length = 98
Score = 69.9 bits (35), Expect = 5e-13
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 25 gtggctgttccacttatgatgaggacatggcatcctattaccagccatcgcacaaaatta 84
||||||||| ||| || || ||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 98 gtggctgtttcacctaggacgaggacatggcattctattaccagccatcgcgcgaaatta 39
Query: 85 ataggatgcca 95
|| |||||||
Sbjct: 38 atgagatgcca 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 83 taataggatgccatattctcgtcctaggtgtaacaaccac 122
|||||| ||||||| | ||||||||||||| |||| ||||
Sbjct: 59 taatagaatgccatgtcctcgtcctaggtgaaacagccac 98
>49399_osa-miRf10184-akr:pmrd
Length = 98
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 45 gaggacatggcatcctattaccagccatcgcacaaaattaataggatgcca 95
||||||||| ||| |||||| |||||||||||| ||||||||| |||||||
Sbjct: 78 gaggacatgacattctattatcagccatcgcacgaaattaatatgatgcca 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 83 taataggatgccatattctcgtcctaggtgtaacaaccac 122
|||||| ||| ||| | ||||||||||||| |||||||||
Sbjct: 59 taatagaatgtcatgtcctcgtcctaggtgaaacaaccac 98
>49378_osa-miRf10163-akr:pmrd
Length = 102
Score = 61.9 bits (31), Expect = 1e-10
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 25 gtggctgttccacttatgatgaggacatggcatcctattaccagccatcgcacaaaatta 84
||||||||| ||| || || ||||||||| ||| |||||| |||||||||||| ||||||
Sbjct: 100 gtggctgtttcacctaggacgaggacatgacattctattatcagccatcgcacgaaatta 41
Query: 85 ata 87
|||
Sbjct: 40 ata 38
>50383_osa-miRf11168-akr:pmrd
Length = 86
Score = 58.0 bits (29), Expect = 2e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 45 gaggacatggcatcctattaccagccatcgcacaaaattaataggatgc 93
|||| ||||||||||||||| |||| ||| ||| |||||||||||||||
Sbjct: 72 gaggtcatggcatcctattatcagctatcacacgaaattaataggatgc 24
>49560_osa-miRf10345-akr:pmrd
Length = 88
Score = 56.0 bits (28), Expect = 7e-09
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 52 tggcatcctattaccagccatcgcacaaaattaataggatgcca 95
||||||| |||||| |||||| |||| |||||||||||||||||
Sbjct: 66 tggcatcatattactagccatggcacgaaattaataggatgcca 23
>49559_osa-miRf10344-akr:pmrd
Length = 90
Score = 56.0 bits (28), Expect = 7e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 52 tggcatcctattaccagccatcgcacaaaattaataggatgcca 95
||||||| |||||| |||||| |||| |||||||||||||||||
Sbjct: 24 tggcatcatattactagccatggcacgaaattaataggatgcca 67
