miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49046_osa-miR811b:pmrd
Length = 190
Score = 377 bits (190), Expect = e-105
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 1 ggaaacttgaaaactaccgttagatcgagaaatggacgtccgagattcgtccacgtcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaaacttgaaaactaccgttagatcgagaaatggacgtccgagattcgtccacgtcacc 60
Query: 61 atgagttaaaatttaactcgcagattcactcctgagttaaacttttactgggagttaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgagttaaaatttaactcgcagattcactcctgagttaaacttttactgggagttaaat 120
Query: 121 tttaactcatggtgacgtgggcgaatctcgaacgttcgtttctggatccaacggtagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaactcatggtgacgtgggcgaatctcgaacgttcgtttctggatccaacggtagttt 180
Query: 181 ccaagtttcc 190
||||||||||
Sbjct: 181 ccaagtttcc 190
Score = 123 bits (62), Expect = 5e-29
Identities = 162/196 (82%), Gaps = 12/196 (6%)
Strand = Plus / Minus
Query: 1 ggaaacttgaaaactaccgttagatcgagaaatggacgtccgagattcgtccacgtcacc 60
||||||||| ||||||||||| |||| ||||| | |||| ||||||||| ||||||||||
Sbjct: 190 ggaaacttggaaactaccgttggatccagaaacgaacgttcgagattcgcccacgtcacc 131
Query: 61 atgagttaaaatttaactcgcaga------ttcactcctgagttaaacttttactgggag 114
||||||||||||||||||| ||| || |||| |||| || || | |||
Sbjct: 130 atgagttaaaatttaactcccagtaaaagtttaactcaggagtgaatct------gcgag 77
Query: 115 ttaaattttaactcatggtgacgtgggcgaatctcgaacgttcgtttctggatccaacgg 174
|||||||||||||||||||||||||| ||||||||| |||| | ||||| |||| |||||
Sbjct: 76 ttaaattttaactcatggtgacgtggacgaatctcggacgtccatttctcgatctaacgg 17
Query: 175 tagtttccaagtttcc 190
|||||| |||||||||
Sbjct: 16 tagttttcaagtttcc 1
>49045_osa-miR811a:pmrd
Length = 190
Score = 281 bits (142), Expect = 9e-77
Identities = 178/190 (93%)
Strand = Plus / Plus
Query: 1 ggaaacttgaaaactaccgttagatcgagaaatggacgtccgagattcgtccacgtcacc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 1 ggaaacttgaaaactaccgttagatcgagaaatggacgtccgagattcgttcacgtcatc 60
Query: 61 atgagttaaaatttaactcgcagattcactcctgagttaaacttttactgggagttaaat 120
||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct: 61 atgagttaaaatttaactcgcagattcactcatgagttgaaattttactgggagttaaat 120
Query: 121 tttaactcatggtgacgtgggcgaatctcgaacgttcgtttctggatccaacggtagttt 180
|||||||||| ||||||||| ||||||||| |||| | ||||| ||||||||| ||||||
Sbjct: 121 tttaactcattgtgacgtggacgaatctcggacgtccatttctcgatccaacgttagttt 180
Query: 181 ccaagtttcc 190
||||||||||
Sbjct: 181 ccaagtttcc 190
Score = 137 bits (69), Expect = 3e-33
Identities = 165/196 (84%), Gaps = 12/196 (6%)
Strand = Plus / Minus
Query: 1 ggaaacttgaaaactaccgttagatcgagaaatggacgtccgagattcgtccacgtcacc 60
||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggaaacttggaaactaacgttggatcgagaaatggacgtccgagattcgtccacgtcaca 131
Query: 61 atgagttaaaatttaactcgcag----att--cactcctgagttaaacttttactgggag 114
||||||||||||||||||| ||| ||| |||| ||||| || ||| |||
Sbjct: 130 atgagttaaaatttaactcccagtaaaatttcaactcatgagtgaa------tctgcgag 77
Query: 115 ttaaattttaactcatggtgacgtgggcgaatctcgaacgttcgtttctggatccaacgg 174
||||||||||||||||| ||||||| ||||||||| |||| | ||||| |||| |||||
Sbjct: 76 ttaaattttaactcatgatgacgtgaacgaatctcggacgtccatttctcgatctaacgg 17
Query: 175 tagtttccaagtttcc 190
|||||| |||||||||
Sbjct: 16 tagttttcaagtttcc 1
>49047_osa-miR811c:pmrd
Length = 159
Score = 214 bits (108), Expect = 2e-56
Identities = 148/160 (92%), Gaps = 1/160 (0%)
Strand = Plus / Minus
Query: 16 accgttagatcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaattta 75
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 159 accgttggatcgagaaatagacgtccgagattcgtccacgtcaccctgagttaaaattta 100
Query: 76 actcgcagattcactcctgagttaaacttttactgggagttaaattttaactcatggtga 135
|||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 99 actcgcagattcactcatgagttaaa-atttactgagagttaaattttaactcatggtga 41
Query: 136 cgtgggcgaatctcgaacgttcgtttctggatccaacggt 175
||||| |||||||||||||| | ||||| |||| ||||||
Sbjct: 40 cgtggacgaatctcgaacgtccatttctcgatctaacggt 1
Score = 123 bits (62), Expect = 5e-29
Identities = 139/165 (84%), Gaps = 11/165 (6%)
Strand = Plus / Plus
Query: 16 accgttagatcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaattta 75
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 accgttagatcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaattta 60
Query: 76 actcgcag-----attcactcctgagttaaacttttactgggagttaaattttaactcat 130
|||| ||| || |||| ||||| || ||| ||||||||||||||||||
Sbjct: 61 actctcagtaaattttaactcatgagtgaa------tctgcgagttaaattttaactcag 114
Query: 131 ggtgacgtgggcgaatctcgaacgttcgtttctggatccaacggt 175
|||||||||| ||||||||| |||| ||||| |||||||||||
Sbjct: 115 ggtgacgtggacgaatctcggacgtctatttctcgatccaacggt 159
>49968_osa-miRf10753-akr:pmrd
Length = 116
Score = 168 bits (85), Expect = 1e-42
Identities = 106/113 (93%)
Strand = Plus / Minus
Query: 38 gtccgagattcgtccacgtcaccatgagttaaaatttaactcgcagattcactcctgagt 97
||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct: 116 gtccgagattcgtccacgttaccatgagttaaaatttaactcgcggattcactcatgagt 57
Query: 98 taaacttttactgggagttaaattttaactcatggtgacgtgggcgaatctcg 150
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 56 taaaattttattgggagttaaattttaactcatggtgacgtggatgaatctcg 4
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 40 ccgagattcgtccacgtcaccatgagttaaaatttaactc 79
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3 ccgagattcatccacgtcaccatgagttaaaatttaactc 42
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 112 gagttaaattttaactcatggtgacgtgggcgaatctcg 150
|||||||||||||||||||||| |||||| |||||||||
Sbjct: 75 gagttaaattttaactcatggtaacgtggacgaatctcg 113
>49978_osa-miRf10763-akr:pmrd
Length = 148
Score = 165 bits (83), Expect = 2e-41
Identities = 123/136 (90%), Gaps = 4/136 (2%)
Strand = Plus / Plus
Query: 24 atcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaatttaactcgcag 83
||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 atcgagaaatgaacgttcgagattcgtccacgtcaccctgagttaaaatttaactcgcag 60
Query: 84 attcactcctgagttaaacttttactgggagt----taaattttaactcatggtgacgtg 139
|||||||| ||||||||| ||||||| ||||| |||||||||||||||||| |||||
Sbjct: 61 attcactcatgagttaaaattttactaggagttaaataaattttaactcatggtcacgtg 120
Query: 140 ggcgaatctcgaacgt 155
| ||||||||| ||||
Sbjct: 121 gacgaatctcggacgt 136
Score = 95.6 bits (48), Expect = 1e-20
Identities = 51/52 (98%)
Strand = Plus / Minus
Query: 24 atcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaattta 75
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 148 atcgagaaatggacgtccgagattcgtccacgtgaccatgagttaaaattta 97
Score = 79.8 bits (40), Expect = 7e-16
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 112 gagttaaattttaactcatggtgacgtgggcgaatctcgaacgttcgtttct 163
|||||||||||||||||| |||||||||| |||||||||||||||| |||||
Sbjct: 56 gagttaaattttaactcagggtgacgtggacgaatctcgaacgttcatttct 5
>49691_osa-miRf10476-akr:pmrd
Length = 143
Score = 147 bits (74), Expect = 4e-36
Identities = 114/126 (90%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 25 tcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaatttaactcgcaga 84
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 1 tcgagaaatggacgtccgagattcatccacgtcaccataagttaaaatttaactcgtgga 60
Query: 85 ttcactcctgagttaaacttttactgggagtt-aaattttaactcatggtgacgtgggcg 143
||||||| ||||||||| ||||| |||||||| |||| ||||||||||||||| | | ||
Sbjct: 61 ttcactcatgagttaaaattttattgggagttaaaatcttaactcatggtgacatagacg 120
Query: 144 aatctc 149
||||||
Sbjct: 121 aatctc 126
Score = 56.0 bits (28), Expect = 1e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 112 gagttaaattttaactcatggtgacgtgggcgaatctcgaacgt 155
|||||||||||||||| |||||||||||| |||||||| ||||
Sbjct: 55 gagttaaattttaacttatggtgacgtggatgaatctcggacgt 12
Score = 52.0 bits (26), Expect = 2e-07
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 25 tcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaattt 74
|||| ||||||| ||| |||||||||| | ||||||||||||||| ||||
Sbjct: 143 tcgaaaaatggatgtctgagattcgtctatgtcaccatgagttaagattt 94
>49887_osa-miRf10672-akr:pmrd
Length = 113
Score = 133 bits (67), Expect = 5e-32
Identities = 101/111 (90%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 39 tccgagattcgtccacgtcaccatgagttaaaatttaactcgcagattcactcctgagtt 98
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 1 tccgagattcgtccgcgtcaccatgagttaaaatttaactcacagattcactcatgagtt 60
Query: 99 aaacttttactgggagttaaattttaactcatggtgacgtgggcgaatctc 149
||| |||| || |||||||||||||||||| |||||| |||| | ||||||
Sbjct: 61 aaaatttt-ctcggagttaaattttaactcgtggtgatgtggactaatctc 110
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 112 gagttaaattttaactcatggtgacgtgggcgaatctcg 150
|||||||||||||||||||||||||| || |||||||||
Sbjct: 41 gagttaaattttaactcatggtgacgcggacgaatctcg 3
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 42 gagattcgtccacgtcaccatgagttaaaatttaactc 79
|||||| |||||| |||||| |||||||||||||||||
Sbjct: 110 gagattagtccacatcaccacgagttaaaatttaactc 73
>51147_osa-miRf11932-akr:pmrd
Length = 141
Score = 123 bits (62), Expect = 5e-29
Identities = 111/126 (88%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 25 tcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaatttaactcgcaga 84
|||| ||||||||| |||| |||||||||||| || |||||||||||||||||||||| |
Sbjct: 1 tcgaaaaatggacgcccgatattcgtccacgtaac-atgagttaaaatttaactcgcaaa 59
Query: 85 ttcactcctgagttaaacttttactgggagttaaattttaactcatggtgacgtgggcga 144
||||||| ||||||||| ||| ||| ||||| ||||||||||||||| ||||||| | |
Sbjct: 60 ttcactcatgagttaaaatttcactaggagtaaaattttaactcatgcagacgtggacaa 119
Query: 145 atctcg 150
||||||
Sbjct: 120 atctcg 125
Score = 61.9 bits (31), Expect = 2e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 25 tcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaatttaactc 79
|||| ||||||||| |||||||| ||||||||| ||||||||||||||| ||||
Sbjct: 141 tcgaaaaatggacgcccgagatttgtccacgtctgcatgagttaaaattttactc 87
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 112 gagttaaattttaactcatg 131
||||||||||||||||||||
Sbjct: 54 gagttaaattttaactcatg 35
>50673_osa-miRf11458-akr:pmrd
Length = 116
Score = 123 bits (62), Expect = 5e-29
Identities = 100/110 (90%), Gaps = 2/110 (1%)
Strand = Plus / Plus
Query: 41 cgagattcgtccacgtcaccatgagttaaaatttaactcgcagattcactcctgagttaa 100
||||||||||| || ||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct: 5 cgagattcgtctacatcaccatgagttaaaatttaactcgcatattcactcatga-ttaa 63
Query: 101 acttttactgggagttaaattttaactcatggtgacgtgggcgaatctcg 150
| ||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 64 aattttagt-ggagttaaattttaactcatggtgacgtggatgaatctcg 112
Score = 77.8 bits (39), Expect = 3e-15
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 37 cgtccgagattcgtccacgtcaccatgagttaaaatttaactc 79
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 116 cgtccgagattcatccacgtcaccatgagttaaaatttaactc 74
Score = 54.0 bits (27), Expect = 4e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 112 gagttaaattttaactcatggtgacgtgggcgaatctcg 150
|||||||||||||||||||||||| || | |||||||||
Sbjct: 43 gagttaaattttaactcatggtgatgtagacgaatctcg 5
>49376_osa-miRf10161-akr:pmrd
Length = 125
Score = 83.8 bits (42), Expect = 4e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 11 aaactaccgttagatcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaa 70
|||||||| || ||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct: 3 aaactaccattggatcgagaaatggacgtccgaaattcgtccacgtcaccataaattaaa 62
Query: 71 at 72
||
Sbjct: 63 at 64
Score = 69.9 bits (35), Expect = 7e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 9 gaaaactaccgttagatcgagaaatggacgtccgagattcgtccacgtcaccatgagtt 67
|||||||| |||| ||||||||||| ||||||||||||| |||||| |||| |||||||
Sbjct: 125 gaaaactatcgttggatcgagaaatagacgtccgagatttgtccacatcactatgagtt 67
Score = 56.0 bits (28), Expect = 1e-08
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 119 attttaactcatggtgacgtgggcgaatctcgaacgttcgtttctggatccaacggtagt 178
||||||| | |||||||||||| ||||| ||| |||| | ||||| ||||||| ||||||
Sbjct: 64 attttaatttatggtgacgtggacgaatttcggacgtccatttctcgatccaatggtagt 5
Query: 179 ttcc 182
||||
Sbjct: 4 ttcc 1
>49197_osa-miR2862:pmrd
Length = 221
Score = 71.9 bits (36), Expect = 2e-13
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 42 gagattcgtccacgtcaccatgagttaaaatttaactcgcagattcactcctgagttaaa 101
||||||||||||||||| || |||| ||||||| ||||||||||| |||| |||| |||
Sbjct: 175 gagattcgtccacgtcatcacgagtaaaaattttactcgcagatttactcaggagtaaaa 116
Query: 102 cttttactgggagttaaatt 121
||||||| ||||| |||||
Sbjct: 115 attttactaggagtaaaatt 96
Score = 54.0 bits (27), Expect = 4e-08
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 94 gagttaaacttttactgggagttaaattttaactcatggtgacgtgggcgaatct 148
|||| ||| ||||||||||| | ||||||| ||||||| |||||||| |||||||
Sbjct: 91 gagtaaaagttttactgggaataaaatttttactcatgatgacgtggacgaatct 37
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 43 agattcgtccacgtcaccatgagttaaaattt 74
|||||||||||||||| ||||||| |||||||
Sbjct: 37 agattcgtccacgtcatcatgagtaaaaattt 68
>50629_osa-miRf11414-akr:pmrd
Length = 137
Score = 63.9 bits (32), Expect = 4e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 94 gagttaaacttttactgggagttaaattttaactcatggtgacgtgggcgaatctc 149
|||||||| ||||||||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 79 gagttaaaattttactgg-agttaaattttaactcgtgatgacgtggacgaatctc 133
Score = 60.0 bits (30), Expect = 6e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 42 gagattcgtccacgtcaccatgagttaaaatttaactc 79
||||||||||||||||| || |||||||||||||||||
Sbjct: 133 gagattcgtccacgtcatcacgagttaaaatttaactc 96
Score = 46.1 bits (23), Expect = 1e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 42 gagattcgtccacgtcaccatgagttaaaatttaactcg 80
||||||||| ||||||| || |||||||||||||||||
Sbjct: 5 gagattcgttcacgtcatcacaagttaaaatttaactcg 43
>50412_osa-miRf11197-akr:pmrd
Length = 130
Score = 63.9 bits (32), Expect = 4e-11
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 24 atcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaa 71
||||| ||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 130 atcgaaaaatggacgtccgagattcgtccacgtcatcattagtaaaaa 83
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 112 gagttaaattttaactcatggtgacgtgggcgaatctcgaacgt 155
|||| ||||||| |||| || |||||||| ||||||||||||||
Sbjct: 56 gagtaaaatttttactcgtgatgacgtggtcgaatctcgaacgt 13
>49999_osa-miRf10784-akr:pmrd
Length = 128
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 42 gagattcgtccacgtcaccatgagttaaaatttaactcg 80
||||||||||||||||| || ||||||||||||||||||
Sbjct: 121 gagattcgtccacgtcatcacgagttaaaatttaactcg 83
Score = 60.0 bits (30), Expect = 6e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 42 gagattcgtccacgtcaccatgagttaaaatttaactc 79
||||||||||||||||| || |||||||||||||||||
Sbjct: 8 gagattcgtccacgtcatcacgagttaaaatttaactc 45
Score = 54.0 bits (27), Expect = 4e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 111 ggagttaaattttaactcatggtgacgtgggcgaatctc 149
|||||||||||||||||| || |||||||| ||||||||
Sbjct: 46 ggagttaaattttaactcgtgatgacgtggacgaatctc 8
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 112 gagttaaattttaactcatggtgacgtgggcgaatctc 149
||||||||||||||||| || |||||||| ||||||||
Sbjct: 84 gagttaaattttaactcgtgatgacgtggacgaatctc 121
>50082_osa-miRf10867-akr:pmrd
Length = 125
Score = 58.0 bits (29), Expect = 3e-09
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 30 aaatggacgtccgagattcgtccacgtcaccatgagttaaaatttaactcgcagattcac 89
|||| |||||||||||||| ||||||||| ||||||| |||||| |||| | |||| ||
Sbjct: 122 aaatagacgtccgagattcatccacgtcatcatgagtagaaattttactcacggatttac 63
Query: 90 tcctgagttaaacttttactg 110
|| | ||| ||| ||||||||
Sbjct: 62 tcataagtaaaaattttactg 42
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 aaatggacgtccgagattcgtccac 54
|||||||||||||||||||||||||
Sbjct: 4 aaatggacgtccgagattcgtccac 28
