miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49047_osa-miR811c:pmrd
Length = 159
Score = 315 bits (159), Expect = 6e-87
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 1 accgttagatcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accgttagatcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaattta 60
Query: 61 actctcagtaaattttaactcatgagtgaatctgcgagttaaattttaactcagggtgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actctcagtaaattttaactcatgagtgaatctgcgagttaaattttaactcagggtgac 120
Query: 121 gtggacgaatctcggacgtctatttctcgatccaacggt 159
|||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtggacgaatctcggacgtctatttctcgatccaacggt 159
Score = 135 bits (68), Expect = 1e-32
Identities = 140/164 (85%), Gaps = 10/164 (6%)
Strand = Plus / Minus
Query: 1 accgttagatcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaattta 60
|||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 159 accgttggatcgagaaatagacgtccgagattcgtccacgtcaccctgagttaaaattta 100
Query: 61 actctcagtaaattttaactcatgagtgaat-----ctgcgagttaaattttaactcagg 115
|||| ||| || |||||||||| || ||| |||||||||||||||||| |
Sbjct: 99 actcgcaga-----ttcactcatgagttaaaatttactgagagttaaattttaactcatg 45
Query: 116 gtgacgtggacgaatctcggacgtctatttctcgatccaacggt 159
||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 44 gtgacgtggacgaatctcgaacgtccatttctcgatctaacggt 1
>49045_osa-miR811a:pmrd
Length = 190
Score = 218 bits (110), Expect = 1e-57
Identities = 147/158 (93%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 3 cgttagatcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaatttaac 62
|||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 173 cgttggatcgagaaatggacgtccgagattcgtccacgtcacaatgagttaaaatttaac 114
Query: 63 tctcagtaaatttt-aactcatgagtgaatctgcgagttaaattttaactcagggtgacg 121
|| ||||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 113 tcccagtaaaatttcaactcatgagtgaatctgcgagttaaattttaactcatgatgacg 54
Query: 122 tggacgaatctcggacgtctatttctcgatccaacggt 159
|| |||||||||||||||| ||||||||||| ||||||
Sbjct: 53 tgaacgaatctcggacgtccatttctcgatctaacggt 16
Score = 141 bits (71), Expect = 2e-34
Identities = 141/163 (86%), Gaps = 11/163 (6%)
Strand = Plus / Plus
Query: 1 accgttagatcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaattta 60
|||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||
Sbjct: 16 accgttagatcgagaaatggacgtccgagattcgttcacgtcatcatgagttaaaattta 75
Query: 61 actctcagtaaattttaactcatgag-tgaa-----tctgcgagttaaattttaactcag 114
|||| ||| || ||||||||| |||| ||| ||||||||||||||||||
Sbjct: 76 actcgcag-----attcactcatgagttgaaattttactgggagttaaattttaactcat 130
Query: 115 ggtgacgtggacgaatctcggacgtctatttctcgatccaacg 157
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 131 tgtgacgtggacgaatctcggacgtccatttctcgatccaacg 173
>49046_osa-miR811b:pmrd
Length = 190
Score = 214 bits (108), Expect = 1e-56
Identities = 148/160 (92%), Gaps = 1/160 (0%)
Strand = Plus / Minus
Query: 1 accgttagatcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaattta 60
|||||| |||| ||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct: 175 accgttggatccagaaacgaacgttcgagattcgcccacgtcaccatgagttaaaattta 116
Query: 61 actctcagtaaat-tttaactcatgagtgaatctgcgagttaaattttaactcagggtga 119
|||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 115 actcccagtaaaagtttaactcaggagtgaatctgcgagttaaattttaactcatggtga 56
Query: 120 cgtggacgaatctcggacgtctatttctcgatccaacggt 159
||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 55 cgtggacgaatctcggacgtccatttctcgatctaacggt 16
Score = 123 bits (62), Expect = 4e-29
Identities = 139/165 (84%), Gaps = 11/165 (6%)
Strand = Plus / Plus
Query: 1 accgttagatcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaattta 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16 accgttagatcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaattta 75
Query: 61 actctcagtaaattttaactcatgagtgaa------tctgcgagttaaattttaactcag 114
|||| ||| || |||| ||||| || ||| ||||||||||||||||||
Sbjct: 76 actcgcag-----attcactcctgagttaaacttttactgggagttaaattttaactcat 130
Query: 115 ggtgacgtggacgaatctcggacgtctatttctcgatccaacggt 159
|||||||||| ||||||||| |||| ||||| |||||||||||
Sbjct: 131 ggtgacgtgggcgaatctcgaacgttcgtttctggatccaacggt 175
>49978_osa-miRf10763-akr:pmrd
Length = 148
Score = 188 bits (95), Expect = 9e-49
Identities = 136/148 (91%), Gaps = 5/148 (3%)
Strand = Plus / Minus
Query: 9 atcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaattta----actc 64
|||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||
Sbjct: 148 atcgagaaatggacgtccgagattcgtccacgtgaccatgagttaaaatttatttaactc 89
Query: 65 tcagtaaa-ttttaactcatgagtgaatctgcgagttaaattttaactcagggtgacgtg 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ctagtaaaattttaactcatgagtgaatctgcgagttaaattttaactcagggtgacgtg 29
Query: 124 gacgaatctcggacgtctatttctcgat 151
||||||||||| |||| ||||||||||
Sbjct: 28 gacgaatctcgaacgttcatttctcgat 1
Score = 95.6 bits (48), Expect = 1e-20
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 9 atcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaatttaactc 64
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 atcgagaaatgaacgttcgagattcgtccacgtcaccctgagttaaaatttaactc 56
>49968_osa-miRf10753-akr:pmrd
Length = 116
Score = 161 bits (81), Expect = 2e-40
Identities = 106/113 (93%), Gaps = 1/113 (0%)
Strand = Plus / Plus
Query: 26 cgagattcgtccacgtcaccatgagttaaaatttaactctcagtaaa-ttttaactcatg 84
|||||||| |||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct: 4 cgagattcatccacgtcaccatgagttaaaatttaactcccaataaaattttaactcatg 63
Query: 85 agtgaatctgcgagttaaattttaactcagggtgacgtggacgaatctcggac 137
|||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 64 agtgaatccgcgagttaaattttaactcatggtaacgtggacgaatctcggac 116
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 26 cgagattcgtccacgtcaccatgagttaaaatttaactc 64
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 113 cgagattcgtccacgttaccatgagttaaaatttaactc 75
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 96 gagttaaattttaactcagggtgacgtggacgaatctcgg 135
|||||||||||||||||| ||||||||||| |||||||||
Sbjct: 42 gagttaaattttaactcatggtgacgtggatgaatctcgg 3
>49887_osa-miRf10672-akr:pmrd
Length = 113
Score = 147 bits (74), Expect = 3e-36
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 27 gagattcgtccacgtcaccatgagttaaaatttaactctcagtaaattttaactcatgag 86
|||||| |||||| |||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 110 gagattagtccacatcaccacgagttaaaatttaactccgagaaaattttaactcatgag 51
Query: 87 tgaatctgcgagttaaattttaactcagggtgacgtggacgaatctcgga 136
|||||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 50 tgaatctgtgagttaaattttaactcatggtgacgcggacgaatctcgga 1
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 26 cgagattcgtccacgtcaccatgagttaaaatttaactc 64
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 3 cgagattcgtccgcgtcaccatgagttaaaatttaactc 41
>49691_osa-miRf10476-akr:pmrd
Length = 143
Score = 133 bits (67), Expect = 4e-32
Identities = 126/143 (88%), Gaps = 2/143 (1%)
Strand = Plus / Minus
Query: 10 tcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaattt-aactctcag 68
|||| ||||||| || |||||||||| | ||||||||||||||| |||| ||||| ||
Sbjct: 143 tcgaaaaatggatgtctgagattcgtctatgtcaccatgagttaagattttaactcccaa 84
Query: 69 taaa-ttttaactcatgagtgaatctgcgagttaaattttaactcagggtgacgtggacg 127
|||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||| |
Sbjct: 83 taaaattttaactcatgagtgaatccacgagttaaattttaacttatggtgacgtggatg 24
Query: 128 aatctcggacgtctatttctcga 150
||||||||||||| |||||||||
Sbjct: 23 aatctcggacgtccatttctcga 1
Score = 85.7 bits (43), Expect = 9e-18
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 10 tcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaatttaactc 64
||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 1 tcgagaaatggacgtccgagattcatccacgtcaccataagttaaaatttaactc 55
>50673_osa-miRf11458-akr:pmrd
Length = 116
Score = 129 bits (65), Expect = 7e-31
Identities = 99/109 (90%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 26 cgagattcgtccacgtcaccatgagttaaaatttaactctcagtaaattttaactcatga 85
|||||||| |||||||||||||||||||||||||||||| || |||| ||| | ||||||
Sbjct: 112 cgagattcatccacgtcaccatgagttaaaatttaactc-cactaaaattttaatcatga 54
Query: 86 gtgaatctgcgagttaaattttaactcagggtgacgtggacgaatctcg 134
|||||| ||||||||||||||||||||| ||||| || |||||||||||
Sbjct: 53 gtgaatatgcgagttaaattttaactcatggtgatgtagacgaatctcg 5
Score = 69.9 bits (35), Expect = 5e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 96 gagttaaattttaactcagggtgacgtggacgaatctcggacg 138
|||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 74 gagttaaattttaactcatggtgacgtggatgaatctcggacg 116
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 26 cgagattcgtccacgtcaccatgagttaaaatttaactc 64
||||||||||| || ||||||||||||||||||||||||
Sbjct: 5 cgagattcgtctacatcaccatgagttaaaatttaactc 43
>51147_osa-miRf11932-akr:pmrd
Length = 141
Score = 123 bits (62), Expect = 4e-29
Identities = 124/142 (87%), Gaps = 2/142 (1%)
Strand = Plus / Minus
Query: 10 tcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaatttaactctcagt 69
|||| ||||||||| ||||||| ||||||||| ||||||||||||||| |||| |||
Sbjct: 141 tcgaaaaatggacgcccgagatttgtccacgtctgcatgagttaaaattttactcctagt 82
Query: 70 -aaattttaactcatgagtgaatctgcgagttaaattttaactcagggtgacgtggacga 128
|||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct: 81 gaaattttaactcatgagtgaatttgcgagttaaattttaactca-tgttacgtggacga 23
Query: 129 atctcggacgtctatttctcga 150
|| |||| |||| |||| ||||
Sbjct: 22 atatcgggcgtccatttttcga 1
Score = 54.0 bits (27), Expect = 3e-08
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 10 tcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaatttaactc 64
|||| ||||||||| ||| |||||||||||| || |||||||||||||||||||
Sbjct: 1 tcgaaaaatggacgcccgatattcgtccacgtaac-atgagttaaaatttaactc 54
Score = 46.1 bits (23), Expect = 8e-06
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 96 gagttaaattttaactcagggtgacgtggacgaatctcggacgtctatttctcga 150
|||| ||||||||||||| | ||||||||| |||||||| |||| |||| ||||
Sbjct: 87 gagtaaaattttaactcatgcagacgtggacaaatctcgggcgtccatttttcga 141
>49376_osa-miRf10161-akr:pmrd
Length = 125
Score = 67.9 bits (34), Expect = 2e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 8 gatcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaat 57
||||||||||||||||| ||| |||||||||||||||||| | |||||||
Sbjct: 15 gatcgagaaatggacgtccgaaattcgtccacgtcaccataaattaaaat 64
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 116 gtgacgtggacgaatctcggacgtctatttctcgatccaacg 157
|||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 75 gtgatgtggacaaatctcggacgtctatttctcgatccaacg 116
Score = 65.9 bits (33), Expect = 9e-12
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 115 ggtgacgtggacgaatctcggacgtctatttctcgatccaa 155
|||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 52 ggtgacgtggacgaatttcggacgtccatttctcgatccaa 12
Score = 52.0 bits (26), Expect = 1e-07
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 3 cgttagatcgagaaatggacgttcgagattcgtccacgtcaccatgagtt 52
|||| ||||||||||| ||||| ||||||| |||||| |||| |||||||
Sbjct: 116 cgttggatcgagaaatagacgtccgagatttgtccacatcactatgagtt 67
>50629_osa-miRf11414-akr:pmrd
Length = 137
Score = 63.9 bits (32), Expect = 3e-11
Identities = 52/56 (92%), Gaps = 2/56 (3%)
Strand = Plus / Minus
Query: 27 gagattcgtccacgtcaccatgagttaaaatttaactctcagt-aaattttaactc 81
||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||
Sbjct: 133 gagattcgtccacgtcatcacgagttaaaatttaactc-cagtaaaattttaactc 79
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 96 gagttaaattttaactcagggtgacgtggacgaatctc 133
||||||||||||||||| | |||||||||||||||||
Sbjct: 96 gagttaaattttaactcgtgatgacgtggacgaatctc 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 27 gagattcgtccacgtcaccatgagttaaaatttaactc 64
||||||||| ||||||| || ||||||||||||||||
Sbjct: 5 gagattcgttcacgtcatcacaagttaaaatttaactc 42
>50082_osa-miRf10867-akr:pmrd
Length = 125
Score = 63.9 bits (32), Expect = 3e-11
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 70 aaattttaactcatgagtgaatctgcgagttaaattttaactcagggtgacgtggacgaa 129
||||||| ||| |||||| |||| | |||| |||||| ||||| | ||||||||| |||
Sbjct: 47 aaatttttacttatgagtaaatccgtgagtaaaatttctactcatgatgacgtggatgaa 106
Query: 130 tctcggacgtctattt 145
||||||||||||||||
Sbjct: 107 tctcggacgtctattt 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 aaatggacgttcgagattcgtccac 39
|||||||||| ||||||||||||||
Sbjct: 4 aaatggacgtccgagattcgtccac 28
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 121 gtggacgaatctcggacgtctattt 145
|||||||||||||||||||| ||||
Sbjct: 28 gtggacgaatctcggacgtccattt 4
>49197_osa-miR2862:pmrd
Length = 221
Score = 63.9 bits (32), Expect = 3e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 70 aaattttaactcatgagtgaatctgcgagttaaattttaactcagggtgacgtggacgaa 129
||||||| |||| ||||| ||||||||||| ||||||| |||| | |||||||||||||
Sbjct: 112 aaatttttactcctgagtaaatctgcgagtaaaatttttactcgtgatgacgtggacgaa 171
Query: 130 tctc 133
||||
Sbjct: 172 tctc 175
Score = 50.1 bits (25), Expect = 5e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 28 agattcgtccacgtcaccatgagttaaaatttaactctcagtaaa 72
|||||||||||||||| ||||||| ||||||| | || |||||||
Sbjct: 37 agattcgtccacgtcatcatgagtaaaaattttattcccagtaaa 81
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 27 gagattcgtccacgtcaccatgagttaaaatttaactc 64
||||||||||||||||| || |||| ||||||| ||||
Sbjct: 175 gagattcgtccacgtcatcacgagtaaaaattttactc 138
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 101 aaattttaactcagggtgacgtggacgaatct 132
||||||| ||||| | ||||||||||||||||
Sbjct: 68 aaatttttactcatgatgacgtggacgaatct 37
>49999_osa-miRf10784-akr:pmrd
Length = 128
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 27 gagattcgtccacgtcaccatgagttaaaatttaactc 64
||||||||||||||||| || |||||||||||||||||
Sbjct: 8 gagattcgtccacgtcatcacgagttaaaatttaactc 45
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 27 gagattcgtccacgtcaccatgagttaaaatttaactc 64
||||||||||||||||| || |||||||||||||||||
Sbjct: 121 gagattcgtccacgtcatcacgagttaaaatttaactc 84
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 95 cgagttaaattttaactcagggtgacgtggacgaatctc 133
|||||||||||||||||| | |||||||||||||||||
Sbjct: 83 cgagttaaattttaactcgtgatgacgtggacgaatctc 121
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 96 gagttaaattttaactcagggtgacgtggacgaatctc 133
||||||||||||||||| | |||||||||||||||||
Sbjct: 45 gagttaaattttaactcgtgatgacgtggacgaatctc 8
>50412_osa-miRf11197-akr:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 8e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 9 atcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaatttaactc 64
||||| |||| ||||||||||||||| |||||||| || |||| ||||||| ||||
Sbjct: 1 atcgaaaaatagacgttcgagattcgaccacgtcatcacgagtaaaaattttactc 56
Score = 56.0 bits (28), Expect = 8e-09
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 9 atcgagaaatggacgttcgagattcgtccacgtcaccatgagttaaaa 56
||||| |||||||||| |||||||||||||||||| ||| ||| ||||
Sbjct: 130 atcgaaaaatggacgtccgagattcgtccacgtcatcattagtaaaaa 83
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 117 tgacgtggacgaatctcggacgtctatttctcgat 151
|||||||||||||||||||||||| |||| |||||
Sbjct: 96 tgacgtggacgaatctcggacgtccatttttcgat 130
