miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49051_osa-miR812d:pmrd
Length = 153
Score = 208 bits (105), Expect = 9e-55
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 1 cgtatccaacatttgatcatctgccttattcgaaaaatttatnnnnnnnnncaagtcacg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 cgtatccaacatttgatcatctgccttattcgaaaaatttataaaaaaaaacaagtcacg 60
Query: 61 cataaagtattattcatgttttatcatataagaacaataaaaatactaatcatnnnnnnn 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cataaagtattattcatgttttatcatataagaacaataaaaatactaatcataaaaaaa 120
Query: 121 gtaaataagacggacggttaaacgttggacacg 153
|||||||||||||||||||||||||||||||||
Sbjct: 121 gtaaataagacggacggttaaacgttggacacg 153
>49049_osa-miR812b:pmrd
Length = 170
Score = 107 bits (54), Expect = 2e-24
Identities = 89/102 (87%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 54 agtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaatcat 113
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 64 agtcacgcataaagtaatattcatgttttatcatctaataacaataaaaatactaatcat 123
Query: 114 nnnnnnngt--aaataagacggacggttaaacgttggacacg 153
| |||||||||||||||||||||||||||||||
Sbjct: 124 taaaaattttcaaataagacggacggttaaacgttggacacg 165
>49875_osa-miRf10660-akr:pmrd
Length = 191
Score = 91.7 bits (46), Expect = 1e-19
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct: 122 aagtcacgcataaagtattaatcatgttttatcatctaacaacaataaaaatactaat 65
>50503_osa-miRf11288-akr:pmrd
Length = 176
Score = 85.7 bits (43), Expect = 9e-18
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 52 caagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
||||||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||
Sbjct: 111 caagtcacgcataaagtattaatcatgttttatcatctaacaacaatgaaaatactaat 53
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
||||||||||||| || ||||||||||||||
Sbjct: 139 aaataagacggacagtcaaacgttggacacg 169
>49057_osa-miR812j:pmrd
Length = 297
Score = 83.8 bits (42), Expect = 3e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 52 caagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaatc 111
||||||||||||||| || |||||||||||||| || ||| |||||||||||||||||||
Sbjct: 123 caagtcacgcataaactactattcatgttttataatctaataacaataaaaatactaatc 182
Query: 112 at 113
||
Sbjct: 183 at 184
>50423_osa-miRf11208-akr:pmrd
Length = 175
Score = 77.8 bits (39), Expect = 2e-15
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 52 caagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
||||||||||||||||||||| |||| ||||||||| ||| |||||| |||||||||||
Sbjct: 110 caagtcacgcataaagtattaatcatattttatcatctaacaacaatgaaaatactaat 52
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||| ||||||||||||||
Sbjct: 139 aaataagacggacggtcaaacgttggacacg 169
>50576_osa-miRf11361-akr:pmrd
Length = 179
Score = 75.8 bits (38), Expect = 8e-15
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||||||||||||||||||| |||| ||||||||| ||| |||||| |||||||||||
Sbjct: 111 aagtcacgcataaagtattaatcatattttatcatctaacaacaatgaaaatactaat 54
>49729_osa-miRf10514-akr:pmrd
Length = 173
Score = 75.8 bits (38), Expect = 8e-15
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||||||||||||||| ||| |||||||||||||| ||| |||||| |||||||||||
Sbjct: 108 aagtcacgcataaagtgttaatcatgttttatcatctaacaacaatgaaaatactaat 51
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||| ||||||| ||||||||||||||
Sbjct: 137 aaataagatggacggtcaaacgttggacacg 167
>51125_osa-miRf11910-akr:pmrd
Length = 174
Score = 71.9 bits (36), Expect = 1e-13
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 56 tcacgcataaagtattattca-tgttttatcatataagaacaataaaaatactaat 110
||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 106 tcacgcataaagtattaatcaatgttttatcatctaacaacaataaaaatactaat 51
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 127 aagacggacggttaaacgttggacacg 153
|||||||||||| ||||||||||||||
Sbjct: 142 aagacggacggtcaaacgttggacacg 168
>49048_osa-miR812a:pmrd
Length = 234
Score = 71.9 bits (36), Expect = 1e-13
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 54 agtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaatcat 113
|||||| |||||| || ||||||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 138 agtcacacataaaatactattcatgttttatcatgtaataacaataaaaatagtaatcat 79
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||||||||||||||||||
Sbjct: 169 aaataagacggacggttaaacgttggacacg 199
>48793_obt-miR812:pmrd
Length = 175
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 54 agtcacgcataaagtattattcatgttttatcatataagaacaataaaaata 105
|||||| ||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct: 69 agtcacacataaagtactattcatgttttatcatctaataacaataaaaata 120
>50950_osa-miRf11735-akr:pmrd
Length = 185
Score = 69.9 bits (35), Expect = 5e-13
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 52 caagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
||||||||||||||||||||| ||||| |||||||| ||| |||||| |||||||||||
Sbjct: 116 caagtcacgcataaagtattaatcatg-tttatcatctaacaacaatgaaaatactaat 59
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 122 taaataagacggacggttaaacgttggacacg 153
||||||||||||||||| ||||||||||||||
Sbjct: 141 taaataagacggacggtcaaacgttggacacg 172
>50624_osa-miRf11409-akr:pmrd
Length = 167
Score = 69.9 bits (35), Expect = 5e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 52 caagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||||||||||| |||||||| ||||||||||| || ||| || |||||||||||||||
Sbjct: 112 caagtcacgcattaagtattaatcatgttttattatctaacaataataaaaatactaat 54
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||| ||||||||||||||
Sbjct: 129 aaataagacggacggtcaaacgttggacacg 159
>50597_osa-miRf11382-akr:pmrd
Length = 178
Score = 69.9 bits (35), Expect = 5e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 52 caagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatac 106
||||||||||||||| ||||| ||||||||||| || ||| ||||||||||||||
Sbjct: 67 caagtcacgcataaaatattaatcatgttttataatctaacaacaataaaaatac 121
>50829_osa-miRf11614-akr:pmrd
Length = 179
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||||| ||||||||||||| |||||||||||||| ||| | ||||||||||| ||||
Sbjct: 110 aagtcatgcataaagtattaatcatgttttatcatctaacagcaataaaaatattaat 53
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||| ||||||||| ||||
Sbjct: 139 aaataagacggacggtcaaacgttgggcacg 169
>50479_osa-miRf11264-akr:pmrd
Length = 175
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||||||||||||||||||| |||| ||||||||| ||| ||||| |||||||||||
Sbjct: 108 aagtcacgcataaagtattaatcattttttatcatctaacaacaacgaaaatactaat 51
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||| ||||||||||||||
Sbjct: 139 aaataagacggacggtcaaacgttggacacg 169
>50253_osa-miRf11038-akr:pmrd
Length = 172
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||||| ||||||||||||| ||||||||||||| ||| |||||| |||||||||||
Sbjct: 107 aagtcatgcataaagtattaaccatgttttatcatctaacaacaatgaaaatactaat 50
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||| ||||||||||||||
Sbjct: 136 aaataagacggacggtcaaacgttggacacg 166
>50252_osa-miRf11037-akr:pmrd
Length = 172
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||||| ||||||||||||| ||||||||||||| ||| |||||| |||||||||||
Sbjct: 107 aagtcatgcataaagtattaaccatgttttatcatctaacaacaatgaaaatactaat 50
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||| ||||||||||||||
Sbjct: 136 aaataagacggacggtcaaacgttggacacg 166
>50251_osa-miRf11036-akr:pmrd
Length = 179
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||||| ||||||||||||| ||||||||||||| ||| |||||| |||||||||||
Sbjct: 111 aagtcatgcataaagtattaaccatgttttatcatctaacaacaatgaaaatactaat 54
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||| ||||||||||||||
Sbjct: 140 aaataagacggacggtcaaacgttggacacg 170
>49052_osa-miR812e:pmrd
Length = 170
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 122 taaataagacggacggttaaacgttggacacg 153
||||||||||||||||||||||||||||||||
Sbjct: 134 taaataagacggacggttaaacgttggacacg 165
Score = 60.0 bits (30), Expect = 5e-10
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
||||||||||| ||||| |||| || ||||||||| ||| ||||||||||||| ||||
Sbjct: 105 aagtcacgcatgaagtaatatttatattttatcatctaataacaataaaaatagtaat 48
>48800_oru-miR812:pmrd
Length = 174
Score = 63.9 bits (32), Expect = 3e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 58 acgcataaagtattattcatgttttatcatataagaacaataaaaatactaatcat 113
|||||||||||| |||| |||||||||||| ||| | ||||||||||| |||||||
Sbjct: 72 acgcataaagtactatttatgttttatcatctaatagcaataaaaataataatcat 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 122 taaataagacggacggttaaacgttggacacg 153
|||||||||||||| || ||||||||||||||
Sbjct: 37 taaataagacggacagtcaaacgttggacacg 6
>50468_osa-miRf11253-akr:pmrd
Length = 177
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 60 gcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
||||||||||||| |||||||||||||| ||| |||||| |||||| ||||
Sbjct: 102 gcataaagtattaatcatgttttatcatctaacaacaatgaaaatattaat 52
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 122 taaataagacggacggttaaacgttgga 149
||||||||||||||||| ||||||||||
Sbjct: 139 taaataagacggacggtcaaacgttgga 166
>50030_osa-miRf10815-akr:pmrd
Length = 175
Score = 61.9 bits (31), Expect = 1e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 52 caagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatac 106
||||||||| ||||| ||||| |||||||||||||| ||| |||||| |||||||
Sbjct: 109 caagtcacgtataaaatattaatcatgttttatcatctaacaacaatgaaaatac 55
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 122 taaataagacggacggttaaacgttggacacg 153
||||||||||||||||| ||||||||||||||
Sbjct: 138 taaataagacggacggtcaaacgttggacacg 169
>49912_osa-miRf10697-akr:pmrd
Length = 183
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcat 87
|||||||||||||||||||| ||||||||||||||
Sbjct: 118 aagtcacgcataaagtattaatcatgttttatcat 84
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 74 tcatgttttatcatataagaacaataaaaatactaat 110
|||||||||||||| ||| |||||| |||||||||||
Sbjct: 87 tcatgttttatcatctaacaacaatgaaaatactaat 51
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 122 taaataagacggacggttaaacgttgg 148
||||||||||||||||| |||||||||
Sbjct: 147 taaataagacggacggtcaaacgttgg 173
>49911_osa-miRf10696-akr:pmrd
Length = 185
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 aagtcacgcataaagtattattcatgttttatcat 87
|||||||||||||||||||| ||||||||||||||
Sbjct: 67 aagtcacgcataaagtattaatcatgttttatcat 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 74 tcatgttttatcatataagaacaataaaaatactaat 110
|||||||||||||| ||| |||||| |||||||||||
Sbjct: 98 tcatgttttatcatctaacaacaatgaaaatactaat 134
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 122 taaataagacggacggttaaacgttgg 148
||||||||||||||||| |||||||||
Sbjct: 38 taaataagacggacggtcaaacgttgg 12
>49050_osa-miR812c:pmrd
Length = 164
Score = 61.9 bits (31), Expect = 1e-10
Identities = 84/103 (81%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaatca 112
|||||| ||||||| |||||||||||||||||||| ||| || ||||| || || |||||
Sbjct: 56 aagtcatgcataaaatattattcatgttttatcatttaacaataataataacaccaatca 115
Query: 113 t--nnnnnnngtaaataagacggacggttaaacgttggacacg 153
| || |||||||||||||||||||||||||||||
Sbjct: 116 taaaaaaaaattatataagacggacggttaaacgttggacacg 158
>49549_osa-miRf10334-akr:pmrd
Length = 162
Score = 60.0 bits (30), Expect = 5e-10
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaat 110
|||| ||||||||||||||| ||||||||||||| ||| |||||| |||| ||||||
Sbjct: 108 aagtgacgcataaagtattaaacatgttttatcatctaacaacaatgaaaacactaat 51
>49053_osa-miR812f:pmrd
Length = 179
Score = 58.0 bits (29), Expect = 2e-09
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcatataagaacaataaaaatactaatca 112
||||||| ||||||||| |||| |||||||| || ||| ||||||||||||| ||||||
Sbjct: 110 aagtcacacataaagtactatttgtgttttataatctaataacaataaaaatattaatca 51
Query: 113 t 113
|
Sbjct: 50 t 50
>51120_osa-miRf11905-akr:pmrd
Length = 174
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgttttatcat 87
|||||||| ||||||||||| ||||||||||||||
Sbjct: 108 aagtcacgtataaagtattaatcatgttttatcat 74
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||| ||||||||||||||
Sbjct: 138 aaataagacggacggtcaaacgttggacacg 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 125 ataagacggacggttaaacgttgg 148
|||||||||||||| |||||||||
Sbjct: 34 ataagacggacggtcaaacgttgg 11
>51166_osa-miRf11951-akr:pmrd
Length = 174
Score = 46.1 bits (23), Expect = 8e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 68 tattattcatgttttatcatataagaacaataaaaatactaat 110
|||||||||| ||||||||| ||| || ||| |||||||||||
Sbjct: 81 tattattcatattttatcatctaaaaataatgaaaatactaat 123
>50654_osa-miRf11439-akr:pmrd
Length = 173
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 aaataagacggacggttaaacgttggacacg 153
|||||||||||||||| ||||||||| ||||
Sbjct: 137 aaataagacggacggtcaaacgttggccacg 167
>49056_osa-miR812i:pmrd
Length = 242
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 53 aagtcacgcataaagtattattcatgtttta 83
|||||| |||||||||| |||||||||||||
Sbjct: 140 aagtcatgcataaagtaatattcatgtttta 110
>49054_osa-miR812g:pmrd
Length = 242
Score = 40.1 bits (20), Expect = 5e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 71 tattcatgttttatcatataagaacaataaaaatactaat 110
||||||| |||||| || | | ||||||||||||||||||
Sbjct: 116 tattcatattttattatctcataacaataaaaatactaat 155
