miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49181_osa-miR1882c:pmrd
Length = 130
Score = 258 bits (130), Expect = 9e-70
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
Query: 61 ccaaagctggttgttgtatctatgggaaagggttccctaacgaaatgatcttggacgcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccaaagctggttgttgtatctatgggaaagggttccctaacgaaatgatcttggacgcaa 120
Query: 121 tctaggagtt 130
||||||||||
Sbjct: 121 tctaggagtt 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 90 gggttccctaacgaaatgatcttggacgcaatctagga 127
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 40 gggttccctaaagaaatgaccttgaaagcaatctagga 3
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 tcctagattgctttcaaggtcatttctttagggaaccc 40
||||||||||| | |||| ||||||| |||||||||||
Sbjct: 127 tcctagattgcgtccaagatcatttcgttagggaaccc 90
>49182_osa-miR1882d:pmrd
Length = 160
Score = 224 bits (113), Expect = 1e-59
Identities = 128/132 (96%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 tatcctagattgctttcaaggtcatttctttaggaaaccccattcccataaattcagtat 75
Query: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 76 ccaaagatggttgttgtatctatgggaataagggttccctaacgaaatgatcttggacgc 135
Query: 119 aatctaggagtt 130
||||||||||||
Sbjct: 136 aatctaggagtt 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 tcctagattgctttcaaggtcatttctttagggaaccc 40
||||||||||| | |||| ||||||| |||||||||||
Sbjct: 144 tcctagattgcgtccaagatcatttcgttagggaaccc 107
>49183_osa-miR1882e:pmrd
Length = 141
Score = 216 bits (109), Expect = 3e-57
Identities = 127/132 (96%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 64
Query: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 65 ccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttggacgt 124
Query: 119 aatctaggagtt 130
||||||||||||
Sbjct: 125 aatctaggagtt 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 90 gggttccctaacgaaatgatcttggacgcaatctagga 127
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 44 gggttccctaaagaaatgaccttgaaagcaatctagga 7
>49097_osa-miR1317:pmrd
Length = 161
Score = 216 bits (109), Expect = 3e-57
Identities = 127/132 (96%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 75
Query: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 76 ccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttggacgt 135
Query: 119 aatctaggagtt 130
||||||||||||
Sbjct: 136 aatctaggagtt 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 90 gggttccctaacgaaatgatcttggacgcaatctagga 127
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 55 gggttccctaaagaaatgaccttgaaagcaatctagga 18
>49096_osa-miR1317:pmrd
Length = 161
Score = 216 bits (109), Expect = 3e-57
Identities = 127/132 (96%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 75
Query: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 76 ccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttggacgt 135
Query: 119 aatctaggagtt 130
||||||||||||
Sbjct: 136 aatctaggagtt 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 90 gggttccctaacgaaatgatcttggacgcaatctagga 127
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 55 gggttccctaaagaaatgaccttgaaagcaatctagga 18
>49095_osa-miR1317:pmrd
Length = 161
Score = 216 bits (109), Expect = 3e-57
Identities = 127/132 (96%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 75
Query: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 76 ccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttggacgt 135
Query: 119 aatctaggagtt 130
||||||||||||
Sbjct: 136 aatctaggagtt 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 90 gggttccctaacgaaatgatcttggacgcaatctagga 127
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 55 gggttccctaaagaaatgaccttgaaagcaatctagga 18
>49184_osa-miR1882f:pmrd
Length = 160
Score = 194 bits (98), Expect = 1e-50
Identities = 120/125 (96%), Gaps = 3/125 (2%)
Strand = Plus / Plus
Query: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 75
Query: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct: 76 ccaaagctggttgctgtatctatgggaataagggtt-cctaacgaaatgatcttggatgc 134
Query: 119 aatct 123
|||||
Sbjct: 135 aatct 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 90 gggttccctaacgaaatgatcttggacgcaatctagga 127
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 55 gggttccctaaagaaatgaccttgaaagcaatctagga 18
>49185_osa-miR1882g:pmrd
Length = 158
Score = 190 bits (96), Expect = 2e-49
Identities = 124/131 (94%), Gaps = 3/131 (2%)
Strand = Plus / Plus
Query: 2 atcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtatc 61
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 16 atcctagattgctttcaaggtcatttctttatgga-ccccattcccataaattcagtatc 74
Query: 62 caaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgca 119
||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 75 caaagatggttgctgtatctatgggaataagggttccataacgaaatgatcttggacgca 134
Query: 120 atctaggagtt 130
|||||||||||
Sbjct: 135 atctaggagtt 145
>49180_osa-miR1882b:pmrd
Length = 160
Score = 184 bits (93), Expect = 1e-47
Identities = 123/132 (93%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct: 16 tatcctagattgctttcaaggtcatttctttatggaaccccattcccataaatttattat 75
Query: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
|||||| |||||| ||||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 76 ccaaagatggttgctgtatctatgggaataagggttccataatgaaatgatcttggacgc 135
Query: 119 aatctaggagtt 130
||||||||||||
Sbjct: 136 aatctaggagtt 147
>49186_osa-miR1882h:pmrd
Length = 193
Score = 165 bits (83), Expect = 1e-41
Identities = 119/130 (91%), Gaps = 2/130 (1%)
Strand = Plus / Plus
Query: 3 tcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtatcc 62
||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 32 tcctagattgctttcaaggtcatttctttctgaaaccccgttcccataaattcagtatcc 91
Query: 63 aaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgcaa 120
||||||||||||||||||||||| | ||||||| | || |||||||||||||||||||
Sbjct: 92 aaagctggttgttgtatctatggaaataagggtttcagaatgaaatgatcttggacgcaa 151
Query: 121 tctaggagtt 130
||||||||||
Sbjct: 152 tctaggagtt 161
>49179_osa-miR1882a:pmrd
Length = 159
Score = 165 bits (83), Expect = 1e-41
Identities = 119/130 (91%), Gaps = 2/130 (1%)
Strand = Plus / Plus
Query: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 18 tatcctagattgctttcaaggtcatttctttatggaagcccattcccataaattcagtat 77
Query: 61 ccaaagctggttgttgtatctatgggaaagggttccctaacgaaatgatcttggacgcaa 120
|||||| ||||||||||||||| | ||||||| |||||||||||||||||| ||||
Sbjct: 78 ccaaagatggttgttgtatcta--aataggggttccataacgaaatgatcttggatgcaa 135
Query: 121 tctaggagtt 130
||||||||||
Sbjct: 136 tctaggagtt 145
