miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49182_osa-miR1882d:pmrd
Length = 160
Score = 317 bits (160), Expect = 1e-87
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattc 60
Query: 61 ccataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacga 120
Query: 121 aatgatcttggacgcaatctaggagtttgctgataataac 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgatcttggacgcaatctaggagtttgctgataataac 160
>49097_osa-miR1317:pmrd
Length = 161
Score = 260 bits (131), Expect = 3e-70
Identities = 146/151 (96%)
Strand = Plus / Plus
Query: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattccc 62
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 63 ataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacgaaa 122
||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 123 tgatcttggacgcaatctaggagtttgctga 153
|||||||||||| ||||||||||||||||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctga 153
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 107 gggttccctaacgaaatgatcttggacgcaatctagga 144
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 55 gggttccctaaagaaatgaccttgaaagcaatctagga 18
>49096_osa-miR1317:pmrd
Length = 161
Score = 260 bits (131), Expect = 3e-70
Identities = 146/151 (96%)
Strand = Plus / Plus
Query: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattccc 62
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 63 ataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacgaaa 122
||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 123 tgatcttggacgcaatctaggagtttgctga 153
|||||||||||| ||||||||||||||||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctga 153
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 107 gggttccctaacgaaatgatcttggacgcaatctagga 144
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 55 gggttccctaaagaaatgaccttgaaagcaatctagga 18
>49095_osa-miR1317:pmrd
Length = 161
Score = 260 bits (131), Expect = 3e-70
Identities = 146/151 (96%)
Strand = Plus / Plus
Query: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattccc 62
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 63 ataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacgaaa 122
||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 123 tgatcttggacgcaatctaggagtttgctga 153
|||||||||||| ||||||||||||||||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctga 153
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 107 gggttccctaacgaaatgatcttggacgcaatctagga 144
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 55 gggttccctaaagaaatgaccttgaaagcaatctagga 18
>49180_osa-miR1882b:pmrd
Length = 160
Score = 254 bits (128), Expect = 2e-68
Identities = 152/160 (95%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattc 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttatggaaccccattc 60
Query: 61 ccataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacga 120
||||||||| | |||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct: 61 ccataaatttattatccaaagatggttgctgtatctatgggaataagggttccataatga 120
Query: 121 aatgatcttggacgcaatctaggagtttgctgataataac 160
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 aatgatcttggacgcaatctaggagtttgctgatgataac 160
>49185_osa-miR1882g:pmrd
Length = 158
Score = 250 bits (126), Expect = 3e-67
Identities = 151/158 (95%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattccc 62
||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
Query: 63 ataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacgaaa 122
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
Query: 123 tgatcttggacgcaatctaggagtttgctgataataac 160
|||||||||||||||||||||||||||||||| |||||
Sbjct: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
>49183_osa-miR1882e:pmrd
Length = 141
Score = 240 bits (121), Expect = 3e-64
Identities = 136/141 (96%)
Strand = Plus / Plus
Query: 12 ccaatatcctagattgctttcaaggtcatttctttaggaaaccccattcccataaattca 71
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
Query: 72 gtatccaaagatggttgttgtatctatgggaataagggttccctaacgaaatgatcttgg 131
|||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
Query: 132 acgcaatctaggagtttgctg 152
||| |||||||||||||||||
Sbjct: 121 acgtaatctaggagtttgctg 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 107 gggttccctaacgaaatgatcttggacgcaatctagga 144
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 44 gggttccctaaagaaatgaccttgaaagcaatctagga 7
>49184_osa-miR1882f:pmrd
Length = 160
Score = 234 bits (118), Expect = 2e-62
Identities = 143/150 (95%), Gaps = 1/150 (0%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattc 60
Query: 61 ccataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacga 120
||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||
Sbjct: 61 ccataaattcagtatccaaagctggttgctgtatctatgggaataagggtt-cctaacga 119
Query: 121 aatgatcttggacgcaatctaggagtttgc 150
|||||||||||| ||||||| ||| |||||
Sbjct: 120 aatgatcttggatgcaatcttggattttgc 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 107 gggttccctaacgaaatgatcttggacgcaatctagga 144
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 55 gggttccctaaagaaatgaccttgaaagcaatctagga 18
>49186_osa-miR1882h:pmrd
Length = 193
Score = 224 bits (113), Expect = 2e-59
Identities = 143/153 (93%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattc 60
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 15 tgttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttc 74
Query: 61 ccataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacga 120
||||||||||||||||||||| |||||||||||||||||| |||||||||| | || ||
Sbjct: 75 ccataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatga 134
Query: 121 aatgatcttggacgcaatctaggagtttgctga 153
|||||||||||||||||||||||||||||||||
Sbjct: 135 aatgatcttggacgcaatctaggagtttgctga 167
>49181_osa-miR1882c:pmrd
Length = 130
Score = 224 bits (113), Expect = 2e-59
Identities = 128/132 (96%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 16 tatcctagattgctttcaaggtcatttctttaggaaaccccattcccataaattcagtat 75
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
Query: 76 ccaaagatggttgttgtatctatgggaataagggttccctaacgaaatgatcttggacgc 135
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
Query: 136 aatctaggagtt 147
||||||||||||
Sbjct: 119 aatctaggagtt 130
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 107 gggttccctaacgaaatgatcttggacgcaatctagga 144
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 40 gggttccctaaagaaatgaccttgaaagcaatctagga 3
>49179_osa-miR1882a:pmrd
Length = 159
Score = 220 bits (111), Expect = 2e-58
Identities = 148/160 (92%), Gaps = 4/160 (2%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattc 60
|||||||| |||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 3 tgttatcggtaccaatatcctagattgctttcaaggtcatttctttatggaagcccattc 62
Query: 61 ccataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacga 120
||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct: 63 ccataaattcagtatccaaagatggttgttgtatcta----aataggggttccataacga 118
Query: 121 aatgatcttggacgcaatctaggagtttgctgataataac 160
|||||||||||| ||||||||||||||||||||| |||||
Sbjct: 119 aatgatcttggatgcaatctaggagtttgctgatgataac 158
