miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49183_osa-miR1882e:pmrd
Length = 141
Score = 280 bits (141), Expect = 3e-76
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
Query: 121 acgtaatctaggagtttgctg 141
|||||||||||||||||||||
Sbjct: 121 acgtaatctaggagtttgctg 141
>49097_osa-miR1317:pmrd
Length = 161
Score = 280 bits (141), Expect = 3e-76
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 71
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 131
Query: 121 acgtaatctaggagtttgctg 141
|||||||||||||||||||||
Sbjct: 132 acgtaatctaggagtttgctg 152
>49096_osa-miR1317:pmrd
Length = 161
Score = 280 bits (141), Expect = 3e-76
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 71
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 131
Query: 121 acgtaatctaggagtttgctg 141
|||||||||||||||||||||
Sbjct: 132 acgtaatctaggagtttgctg 152
>49095_osa-miR1317:pmrd
Length = 161
Score = 280 bits (141), Expect = 3e-76
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 71
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 131
Query: 121 acgtaatctaggagtttgctg 141
|||||||||||||||||||||
Sbjct: 132 acgtaatctaggagtttgctg 152
>49182_osa-miR1882d:pmrd
Length = 160
Score = 240 bits (121), Expect = 2e-64
Identities = 136/141 (96%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12 ccaatatcctagattgctttcaaggtcatttctttaggaaaccccattcccataaattca 71
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
|||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 72 gtatccaaagatggttgttgtatctatgggaataagggttccctaacgaaatgatcttgg 131
Query: 121 acgtaatctaggagtttgctg 141
||| |||||||||||||||||
Sbjct: 132 acgcaatctaggagtttgctg 152
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 7 tcctagattgctttcaaggtcatttctttagggaaccc 44
||||||||||| | |||| ||||||| |||||||||||
Sbjct: 144 tcctagattgcgtccaagatcatttcgttagggaaccc 107
>49184_osa-miR1882f:pmrd
Length = 160
Score = 220 bits (111), Expect = 2e-58
Identities = 133/139 (95%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 71
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 72 gtatccaaagctggttgctgtatctatgggaataagggtt-cctaacgaaatgatcttgg 130
Query: 121 acgtaatctaggagtttgc 139
| | ||||| ||| |||||
Sbjct: 131 atgcaatcttggattttgc 149
>49185_osa-miR1882g:pmrd
Length = 158
Score = 216 bits (109), Expect = 3e-57
Identities = 134/141 (95%), Gaps = 1/141 (0%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 11 ccaacatcctagattgctttcaaggtcatttctttatgga-ccccattcccataaattca 69
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
|||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 70 gtatccaaagatggttgctgtatctatgggaataagggttccataacgaaatgatcttgg 129
Query: 121 acgtaatctaggagtttgctg 141
||| |||||||||||||||||
Sbjct: 130 acgcaatctaggagtttgctg 150
>49181_osa-miR1882c:pmrd
Length = 130
Score = 216 bits (109), Expect = 3e-57
Identities = 127/132 (96%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 5 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
Query: 65 ccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttggacgt 124
||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
Query: 125 aatctaggagtt 136
||||||||||||
Sbjct: 119 aatctaggagtt 130
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 7 tcctagattgctttcaaggtcatttctttagggaaccc 44
||||||||||| | |||| ||||||| |||||||||||
Sbjct: 127 tcctagattgcgtccaagatcatttcgttagggaaccc 90
>49180_osa-miR1882b:pmrd
Length = 160
Score = 216 bits (109), Expect = 3e-57
Identities = 133/141 (94%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 12 ccaatatcctagattgctttcaaggtcatttctttatggaaccccattcccataaattta 71
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
||||||||| ||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 72 ttatccaaagatggttgctgtatctatgggaataagggttccataatgaaatgatcttgg 131
Query: 121 acgtaatctaggagtttgctg 141
||| |||||||||||||||||
Sbjct: 132 acgcaatctaggagtttgctg 152
>49186_osa-miR1882h:pmrd
Length = 193
Score = 176 bits (89), Expect = 3e-45
Identities = 128/141 (90%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct: 26 ccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttcccataaattca 85
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
||||||||||||||||| ||||||||||| |||||||||| | | |||||||||||||
Sbjct: 86 gtatccaaagctggttgttgtatctatggaaataagggtttcagaatgaaatgatcttgg 145
Query: 121 acgtaatctaggagtttgctg 141
||| |||||||||||||||||
Sbjct: 146 acgcaatctaggagtttgctg 166
>49179_osa-miR1882a:pmrd
Length = 159
Score = 174 bits (88), Expect = 1e-44
Identities = 128/141 (90%), Gaps = 4/141 (2%)
Strand = Plus / Plus
Query: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 14 ccaatatcctagattgctttcaaggtcatttctttatggaagcccattcccataaattca 73
Query: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
|||||||||| |||||| |||||||| |||| ||||||| | |||||||||||||||
Sbjct: 74 gtatccaaagatggttgttgtatcta----aataggggttccataacgaaatgatcttgg 129
Query: 121 acgtaatctaggagtttgctg 141
| | |||||||||||||||||
Sbjct: 130 atgcaatctaggagtttgctg 150
