miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49184_osa-miR1882f:pmrd
Length = 160
Score = 317 bits (160), Expect = 1e-87
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattc 60
Query: 61 ccataaattcagtatccaaagctggttgctgtatctatgggaataagggttcctaacgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccataaattcagtatccaaagctggttgctgtatctatgggaataagggttcctaacgaa 120
Query: 121 atgatcttggatgcaatcttggattttgcggacgataacg 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgatcttggatgcaatcttggattttgcggacgataacg 160
>49097_osa-miR1317:pmrd
Length = 161
Score = 248 bits (125), Expect = 1e-66
Identities = 150/157 (95%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggtt-cctaacgaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 122 tgatcttggatgcaatcttggattttgcggacgataa 158
|||||||||| | ||||| ||| ||||| ||||||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctgacgataa 159
>49096_osa-miR1317:pmrd
Length = 161
Score = 248 bits (125), Expect = 1e-66
Identities = 150/157 (95%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggtt-cctaacgaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 122 tgatcttggatgcaatcttggattttgcggacgataa 158
|||||||||| | ||||| ||| ||||| ||||||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctgacgataa 159
>49095_osa-miR1317:pmrd
Length = 161
Score = 248 bits (125), Expect = 1e-66
Identities = 150/157 (95%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggtt-cctaacgaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 122 tgatcttggatgcaatcttggattttgcggacgataa 158
|||||||||| | ||||| ||| ||||| ||||||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctgacgataa 159
>49182_osa-miR1882d:pmrd
Length = 160
Score = 234 bits (118), Expect = 2e-62
Identities = 143/150 (95%), Gaps = 1/150 (0%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattc 60
Query: 61 ccataaattcagtatccaaagctggttgctgtatctatgggaataagggtt-cctaacga 119
||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||
Sbjct: 61 ccataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacga 120
Query: 120 aatgatcttggatgcaatcttggattttgc 149
|||||||||||| ||||||| ||| |||||
Sbjct: 121 aatgatcttggacgcaatctaggagtttgc 150
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 18 tcctagattgctttcaaggtcatttctttagggaaccc 55
||||||||||| | |||| ||||||| |||||||||||
Sbjct: 144 tcctagattgcgtccaagatcatttcgttagggaaccc 107
>49180_osa-miR1882b:pmrd
Length = 160
Score = 222 bits (112), Expect = 6e-59
Identities = 149/160 (93%), Gaps = 1/160 (0%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttatggaaccccattc 60
Query: 61 ccataaattcagtatccaaagctggttgctgtatctatgggaataagggttcc-taacga 119
||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct: 61 ccataaatttattatccaaagatggttgctgtatctatgggaataagggttccataatga 120
Query: 120 aatgatcttggatgcaatcttggattttgcggacgataac 159
|||||||||||| ||||||| ||| ||||| || ||||||
Sbjct: 121 aatgatcttggacgcaatctaggagtttgctgatgataac 160
>49183_osa-miR1882e:pmrd
Length = 141
Score = 220 bits (111), Expect = 2e-58
Identities = 133/139 (95%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 12 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
Query: 72 gtatccaaagctggttgctgtatctatgggaataagggtt-cctaacgaaatgatcttgg 130
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
Query: 131 atgcaatcttggattttgc 149
| | ||||| ||| |||||
Sbjct: 121 acgtaatctaggagtttgc 139
>49185_osa-miR1882g:pmrd
Length = 158
Score = 218 bits (110), Expect = 1e-57
Identities = 148/158 (93%), Gaps = 2/158 (1%)
Strand = Plus / Plus
Query: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
Query: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcc-taacgaaa 121
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
Query: 122 tgatcttggatgcaatcttggattttgcggacgataac 159
|||||||||| ||||||| ||| ||||| || ||||||
Sbjct: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
>49181_osa-miR1882c:pmrd
Length = 130
Score = 194 bits (98), Expect = 1e-50
Identities = 120/125 (96%), Gaps = 3/125 (2%)
Strand = Plus / Plus
Query: 16 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtat 60
Query: 76 ccaaagctggttgctgtatctatgggaataagggtt-cctaacgaaatgatcttggatgc 134
||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct: 61 ccaaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgc 118
Query: 135 aatct 139
|||||
Sbjct: 119 aatct 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 18 tcctagattgctttcaaggtcatttctttagggaaccc 55
||||||||||| | |||| ||||||| |||||||||||
Sbjct: 127 tcctagattgcgtccaagatcatttcgttagggaaccc 90
>49186_osa-miR1882h:pmrd
Length = 193
Score = 192 bits (97), Expect = 6e-50
Identities = 146/161 (90%), Gaps = 1/161 (0%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattc 60
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||
Sbjct: 15 tgttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttc 74
Query: 61 ccataaattcagtatccaaagctggttgctgtatctatgggaataaggg-ttcctaacga 119
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||| || ||
Sbjct: 75 ccataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatga 134
Query: 120 aatgatcttggatgcaatcttggattttgcggacgataacg 160
|||||||||||| ||||||| ||| ||||| ||||||||||
Sbjct: 135 aatgatcttggacgcaatctaggagtttgctgacgataacg 175
>49179_osa-miR1882a:pmrd
Length = 159
Score = 190 bits (96), Expect = 2e-49
Identities = 146/161 (90%), Gaps = 5/161 (3%)
Strand = Plus / Plus
Query: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattc 60
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 3 tgttatcggtaccaatatcctagattgctttcaaggtcatttctttatggaagcccattc 62
Query: 61 ccataaattcagtatccaaagctggttgctgtatctatgggaataagggttcc-taacga 119
||||||||||||||||||||| |||||| |||||||| |||| ||||||| ||||||
Sbjct: 63 ccataaattcagtatccaaagatggttgttgtatcta----aataggggttccataacga 118
Query: 120 aatgatcttggatgcaatcttggattttgcggacgataacg 160
|||||||||||||||||||| ||| ||||| || |||||||
Sbjct: 119 aatgatcttggatgcaatctaggagtttgctgatgataacg 159
