miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49185_osa-miR1882g:pmrd
Length = 158
Score = 313 bits (158), Expect = 2e-86
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1 tttatcgttaccaacatcctagattgctttcaaggtcatttctttatggaccccattccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttatcgttaccaacatcctagattgctttcaaggtcatttctttatggaccccattccc 60
Query: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
Query: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
>49180_osa-miR1882b:pmrd
Length = 160
Score = 266 bits (134), Expect = 5e-72
Identities = 153/158 (96%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttatggaaccccattccc 62
Query: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 63 ataaatttattatccaaagatggttgctgtatctatgggaataagggttccataatgaaa 122
Query: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tgatcttggacgcaatctaggagtttgctgatgataac 160
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 105 gggttccataacgaaatgatcttggacgcaatctagga 142
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 55 gggttccataaagaaatgaccttgaaagcaatctagga 18
>49182_osa-miR1882d:pmrd
Length = 160
Score = 250 bits (126), Expect = 3e-67
Identities = 151/158 (95%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattccc 62
Query: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 63 ataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacgaaa 122
Query: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
|||||||||||||||||||||||||||||||| |||||
Sbjct: 123 tgatcttggacgcaatctaggagtttgctgataataac 160
>49097_osa-miR1317:pmrd
Length = 161
Score = 240 bits (121), Expect = 3e-64
Identities = 149/157 (94%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 121 tgatcttggacgcaatctaggagtttgctgatgataa 157
|||||||||||| |||||||||||||||||| |||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctgacgataa 159
>49096_osa-miR1317:pmrd
Length = 161
Score = 240 bits (121), Expect = 3e-64
Identities = 149/157 (94%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 121 tgatcttggacgcaatctaggagtttgctgatgataa 157
|||||||||||| |||||||||||||||||| |||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctgacgataa 159
>49095_osa-miR1317:pmrd
Length = 161
Score = 240 bits (121), Expect = 3e-64
Identities = 149/157 (94%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 121 tgatcttggacgcaatctaggagtttgctgatgataa 157
|||||||||||| |||||||||||||||||| |||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctgacgataa 159
>49184_osa-miR1882f:pmrd
Length = 160
Score = 218 bits (110), Expect = 1e-57
Identities = 148/158 (93%), Gaps = 2/158 (1%)
Strand = Plus / Plus
Query: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcc-taacgaaa 121
Query: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
|||||||||| ||||||| ||| ||||| || ||||||
Sbjct: 122 tgatcttggatgcaatcttggattttgcggacgataac 159
>49183_osa-miR1882e:pmrd
Length = 141
Score = 216 bits (109), Expect = 4e-57
Identities = 134/141 (95%), Gaps = 1/141 (0%)
Strand = Plus / Plus
Query: 11 ccaacatcctagattgctttcaaggtcatttctttatgga-ccccattcccataaattca 69
|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
Query: 70 gtatccaaagatggttgctgtatctatgggaataagggttccataacgaaatgatcttgg 129
|||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
Query: 130 acgcaatctaggagtttgctg 150
||| |||||||||||||||||
Sbjct: 121 acgtaatctaggagtttgctg 141
>49179_osa-miR1882a:pmrd
Length = 159
Score = 216 bits (109), Expect = 4e-57
Identities = 147/158 (93%), Gaps = 5/158 (3%)
Strand = Plus / Plus
Query: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatggac-cccattccc 60
|||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5 ttatcggtaccaatatcctagattgctttcaaggtcatttctttatggaagcccattccc 64
Query: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
|||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct: 65 ataaattcagtatccaaagatggttgttgtatcta----aataggggttccataacgaaa 120
Query: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
|||||||||| |||||||||||||||||||||||||||
Sbjct: 121 tgatcttggatgcaatctaggagtttgctgatgataac 158
>49186_osa-miR1882h:pmrd
Length = 193
Score = 202 bits (102), Expect = 6e-53
Identities = 145/158 (91%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
||||||||||||| ||||||||||||||||||||||||||||| || | |||| |||||
Sbjct: 17 ttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttccc 76
Query: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
||||||||||||||||||| |||||| ||||||||||| |||||||||| || || ||||
Sbjct: 77 ataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatgaaa 136
Query: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
||||||||||||||||||||||||||||||| ||||||
Sbjct: 137 tgatcttggacgcaatctaggagtttgctgacgataac 174
>49181_osa-miR1882c:pmrd
Length = 130
Score = 190 bits (96), Expect = 2e-49
Identities = 124/131 (94%), Gaps = 3/131 (2%)
Strand = Plus / Plus
Query: 16 atcctagattgctttcaaggtcatttctttatgga-ccccattcccataaattcagtatc 74
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 2 atcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtatc 61
Query: 75 caaagatggttgctgtatctatgggaataagggttccataacgaaatgatcttggacgca 134
||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 62 caaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgca 119
Query: 135 atctaggagtt 145
|||||||||||
Sbjct: 120 atctaggagtt 130
