miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49188_osa-miR1883b:pmrd
Length = 136
Score = 270 bits (136), Expect = 2e-73
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1 cggttgcagcccgtcacaggtatctagtcacctgtgacgggccgagaatggaatccgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggttgcagcccgtcacaggtatctagtcacctgtgacgggccgagaatggaatccgtca 60
Query: 61 aaggaacacacctttgtcagattctacttcctgcccatcacaggtgactagatacctgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaggaacacacctttgtcagattctacttcctgcccatcacaggtgactagatacctgtg 120
Query: 121 acgggccgcaacttac 136
||||||||||||||||
Sbjct: 121 acgggccgcaacttac 136
Score = 67.9 bits (34), Expect = 2e-12
Identities = 106/130 (81%)
Strand = Plus / Minus
Query: 3 gttgcagcccgtcacaggtatctagtcacctgtgacgggccgagaatggaatccgtcaaa 62
||||| ||||||||||||||||||||||||||||| |||| | | | ||||| | ||||
Sbjct: 132 gttgcggcccgtcacaggtatctagtcacctgtgatgggcaggaagtagaatctgacaaa 73
Query: 63 ggaacacacctttgtcagattctacttcctgcccatcacaggtgactagatacctgtgac 122
|| |||||| | ||||| | | | |||| |||||||||||||||||||||||||
Sbjct: 72 ggtgtgttcctttgacggattccattctcggcccgtcacaggtgactagatacctgtgac 13
Query: 123 gggccgcaac 132
|||| |||||
Sbjct: 12 gggctgcaac 3
>49187_osa-miR1883a:pmrd
Length = 118
Score = 95.6 bits (48), Expect = 8e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 10 cccgtcacaggtatctagtcacctgtgacgggccgagaatggaatccgtcaaaggaacac 69
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 2 cccgtcactggtatctagtcacctgtgacgggccgagaatggaacccgtcaaagggacac 61
Score = 67.9 bits (34), Expect = 2e-12
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 11 ccgtcacaggtatctagtcacctgtgacgggccgagaatggaatccgtca 60
|||||||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct: 114 ccgtcacaggcatctagtcacctgtgacggatcgagaatggaacccgtca 65
>51305_osa-miRf12090-akr:pmrd
Length = 100
Score = 93.7 bits (47), Expect = 3e-20
Identities = 89/102 (87%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 17 caggtatctagtcacctgtgacgggccgagaatggaatccgtcaaaggaacacacctttg 76
||||||||||||||||||||||||| | |||||||||||||||| || | |||||||||
Sbjct: 1 caggtatctagtcacctgtgacgggtctagaatggaatccgtcagag--aaacacctttg 58
Query: 77 tcagattctacttcctgcccatcacaggtgactagatacctg 118
|| | ||| ||||| |||| ||||| |||||||||||||||
Sbjct: 59 tcggcttccacttctggcccgtcacaagtgactagatacctg 100
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 17 caggtatctagtcacctgtgacgggcc 43
||||||||||||||| |||||||||||
Sbjct: 100 caggtatctagtcacttgtgacgggcc 74
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 98 tcacaggtgactagatacctg 118
|||||||||||||||||||||
Sbjct: 21 tcacaggtgactagatacctg 1
>50492_osa-miRf11277-akr:pmrd
Length = 112
Score = 79.8 bits (40), Expect = 5e-16
Identities = 94/111 (84%), Gaps = 2/111 (1%)
Strand = Plus / Plus
Query: 11 ccgtcacaggtatctagtcacctgtgacgggccgagaatggaatccgtcaaaggaacaca 70
|||||| ||||||| ||||| |||| | ||||||| |||| || |||||| | ||||||
Sbjct: 1 ccgtcataggtatcaagtcagctgttatgggccgaaaatgaaacccgtcagatgaacac- 59
Query: 71 cctttgtcagattctacttcctgcccatcacaggtgactagatacctgtga 121
|| |||||||||| |||||| |||| |||||||||||| |||||||||||
Sbjct: 60 -ctctgtcagattccacttccggcccgtcacaggtgacttgatacctgtga 109
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 14 tcacaggtatctagtcacctgtgacgggccg 44
||||||||||| |||||||||||||||||||
Sbjct: 109 tcacaggtatcaagtcacctgtgacgggccg 79
>51101_osa-miRf11886-akr:pmrd
Length = 126
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 94 cccatcacaggtgactagatacctgtgacgggccgca 130
|||||||||||||||||| ||||||||||||| ||||
Sbjct: 47 cccatcacaggtgactagttacctgtgacgggtcgca 83
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 10 cccgtcacaggtatctagtcacctgtga 37
||||||||||||| ||||||||||||||
Sbjct: 78 cccgtcacaggtaactagtcacctgtga 51
>50616_osa-miRf11401-akr:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 11 ccgtcacaggtatctagtcacctgtgacgggcc 43
|||||| ||||| ||||||||||||||||||||
Sbjct: 78 ccgtcataggtaactagtcacctgtgacgggcc 46
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 93 gcccatcacaggtgactagatacctgtgacgg 124
|||| |||||||||||||| ||||| ||||||
Sbjct: 47 gcccgtcacaggtgactagttacctatgacgg 78
>49232_osa-miRf10017-akr:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 18 aggtatctagtcacctgtgacggg 41
||||| ||||||||||||||||||
Sbjct: 107 aggtaactagtcacctgtgacggg 84
