miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49189_osa-miR1884a:pmrd
Length = 214
Score = 424 bits (214), Expect = e-119
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 1 tcaaaatgtgtgacgccgttgacttttcatacaacgtttgaccattcgtcttattcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaaatgtgtgacgccgttgacttttcatacaacgtttgaccattcgtcttattcaaaa 60
Query: 61 atttaacataaatatgtaaaagtataagttaagattacattttatttgatgataaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttaacataaatatgtaaaagtataagttaagattacattttatttgatgataaaacaa 120
Query: 121 gttacaataaaataaatgatatttatataacttttttgaataagatgaatggtcaaacgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttacaataaaataaatgatatttatataacttttttgaataagatgaatggtcaaacgt 180
Query: 181 tatgcaaaaagtcaacggtgtcatacattttgaa 214
||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgcaaaaagtcaacggtgtcatacattttgaa 214
Score = 65.9 bits (33), Expect = 1e-11
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 153 tttttgaataagatgaatggtcaaacgttatgcaaaaagtcaacggtgtcatacattttg 212
||||||||||||| ||||||||||||||| | |||||||||||| |||| ||||||||
Sbjct: 61 tttttgaataagacgaatggtcaaacgttgtatgaaaagtcaacggcgtcacacattttg 2
Query: 213 a 213
|
Sbjct: 1 a 1
Score = 65.9 bits (33), Expect = 1e-11
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 1 tcaaaatgtgtgacgccgttgacttttcatacaacgtttgaccattcgtcttattcaaaa 60
||||||||| |||| |||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 213 tcaaaatgtatgacaccgttgactttttgcataacgtttgaccattcatcttattcaaaa 154
Query: 61 a 61
|
Sbjct: 153 a 153
>49190_osa-miR1884b:pmrd
Length = 221
Score = 63.9 bits (32), Expect = 5e-11
Identities = 89/108 (82%)
Strand = Plus / Plus
Query: 103 tatttgatgataaaacaagttacaataaaataaatgatatttatataacttttttgaata 162
|||||||||||||||||||| | ||||| ||||||| | |||||||||||||| ||
Sbjct: 105 tatttgatgataaaacaagtcatggcaaaattaatgatacctgtataacttttttgagta 164
Query: 163 agatgaatggtcaaacgttatgcaaaaagtcaacggtgtcatacattt 210
||| || ||||||||||| ||||||||||||||||||| ||||
Sbjct: 165 agacgagtggtcaaacgtagatttaaaagtcaacggtgtcatatattt 212
Score = 46.1 bits (23), Expect = 1e-05
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 11 tgacgccgttgacttttcatacaacgtttgaccattcgtcttattcaaaaa 61
|||| |||||||||||| | | ||||||||||| |||||||| |||||||
Sbjct: 205 tgacaccgttgacttttaaatctacgtttgaccactcgtcttactcaaaaa 155
>49030_osa-miR806g:pmrd
Length = 240
Score = 63.9 bits (32), Expect = 5e-11
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 148 taacttttttgaataagatgaatggtcaaacgttatgc-aaaaagtcaacggtgtcatac 206
|||||||||||||||||| ||| |||||||| | ||| |||||||||||||||||| ||
Sbjct: 162 taacttttttgaataagacgaacggtcaaac-atgtgctaaaaagtcaacggtgtcaaac 220
Query: 207 attttgaa 214
||||||||
Sbjct: 221 attttgaa 228
Score = 50.1 bits (25), Expect = 7e-07
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 1 tcaaaatgtgtgacgccgttgacttttcatacaacgtttgaccattcgtcttattcaaaa 60
||||||||| |||| |||||||||||| | | |||||||| ||||||||||||||||
Sbjct: 227 tcaaaatgtttgacaccgttgactttttagcacatgtttgaccgttcgtcttattcaaaa 168
Query: 61 a 61
|
Sbjct: 167 a 167
>49024_osa-miR806a:pmrd
Length = 252
Score = 63.9 bits (32), Expect = 5e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 152 ttttttgaataagatgaatggtcaaacgt-tatgcaaaaagtcaacggtgtcatacattt 210
|||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 84 ttttttgaataagacgaatggtcaaacacgtatttaaaaagtcaacggtgtcaaacattt 25
Query: 211 tgaa 214
||||
Sbjct: 24 tgaa 21
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 36 gtttgaccattcgtcttattcaaaaa 61
||||||||||||||||||||||||||
Sbjct: 58 gtttgaccattcgtcttattcaaaaa 83
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 186 aaaaagtcaacggtgtcatacatttt 211
|||||||||||||||||| |||||||
Sbjct: 206 aaaaagtcaacggtgtcaaacatttt 231
>48794_oni-miR812:pmrd
Length = 172
Score = 60.0 bits (30), Expect = 7e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 109 atgataaaacaagttacaataaaataaatgatatttatataacttttttgaataagatga 168
|||||||||||| | | || ||||||||| ||| ||| |||| ||||||||||||| ||
Sbjct: 88 atgataaaacaactcataacaaaataaattataattacataaagtttttgaataagacga 147
Query: 169 atggtcaaac 178
||||||||||
Sbjct: 148 atggtcaaac 157
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 36 gtttgaccattcgtcttattcaaaaa 61
||||||||||||||||||||||||||
Sbjct: 157 gtttgaccattcgtcttattcaaaaa 132
>49029_osa-miR806f:pmrd
Length = 241
Score = 58.0 bits (29), Expect = 3e-09
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 5 aatgtgtgacgccgttgacttttcatacaacgtttgaccattcgtcttattcaaaaa 61
||||| ||||||||||||||||| || | |||||||| |||||||||||||||||
Sbjct: 19 aatgtttgacgccgttgactttttattacatgtttgaccgttcgtcttattcaaaaa 75
>49028_osa-miR806e:pmrd
Length = 255
Score = 58.0 bits (29), Expect = 3e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 tcaaaatgtgtgacgccgttgacttttcatacaacgtttgaccattcgtcttattcaaaa 60
||||||||| ||||||||||||||||| | | |||||||| ||||||||||||||||
Sbjct: 22 tcaaaatgtttgacgccgttgactttttagcatatgtttgaccgttcgtcttattcaaaa 81
Query: 61 a 61
|
Sbjct: 82 a 82
Score = 56.0 bits (28), Expect = 1e-08
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 152 ttttttgaataagatgaatggtcaaacgttatgc-aaaaagtcaacggtgtcatacattt 210
|||||||||||||| ||| |||||||| | |||| ||||||||||||| |||| ||||||
Sbjct: 83 ttttttgaataagacgaacggtcaaacat-atgctaaaaagtcaacggcgtcaaacattt 25
Query: 211 tgaa 214
||||
Sbjct: 24 tgaa 21
>49026_osa-miR806c:pmrd
Length = 270
Score = 56.0 bits (28), Expect = 1e-08
Identities = 54/60 (90%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 152 ttttttgaataagatgaatggtcaaacgttatgc-aaaaagtcaacggtgtcatacattt 210
|||||||||||||| |||||||||||| | ||| |||||||||||||||||| ||||||
Sbjct: 182 ttttttgaataagacgaatggtcaaac-atgtgctaaaaagtcaacggtgtcaaacattt 240
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 36 gtttgaccattcgtcttattcaaaaa 61
||||||||||||||||||||||||||
Sbjct: 208 gtttgaccattcgtcttattcaaaaa 183
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 186 aaaaagtcaacggtgtcatacattttgaa 214
|||||||||||||||||| ||||||||||
Sbjct: 58 aaaaagtcaacggtgtcaaacattttgaa 30
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 tttgaccattcgtcttattcaaaaa 61
||||| |||||||||||||||||||
Sbjct: 67 tttgatcattcgtcttattcaaaaa 91
>49031_osa-miR806h:pmrd
Length = 271
Score = 54.0 bits (27), Expect = 4e-08
Identities = 53/59 (89%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 153 tttttgaataagatgaatggtcaaacgttatgc-aaaaagtcaacggtgtcatacattt 210
||||||||||||| |||||||||||| | ||| |||||||||||||||||| ||||||
Sbjct: 179 tttttgaataagacgaatggtcaaac-atgtgctaaaaagtcaacggtgtcaaacattt 236
Score = 52.0 bits (26), Expect = 2e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 4 aaatgtgtgacgccgttgacttttcatacaacgtttgaccattcgtcttattcaaaaa 61
|||||| | ||||||||||||||| || | |||||||| |||||||||||||||||
Sbjct: 30 aaatgtttaacgccgttgactttttatcatatgtttgaccgttcgtcttattcaaaaa 87
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 36 gtttgaccattcgtcttattcaaaaa 61
||||||||||||||||||||||||||
Sbjct: 204 gtttgaccattcgtcttattcaaaaa 179
>48799_oru-miR806:pmrd
Length = 242
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 36 gtttgaccattcgtcttattcaaaaattt 64
|||||||| ||||||||||||||||||||
Sbjct: 193 gtttgaccgttcgtcttattcaaaaattt 165
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 tttgaccattcgtcttattcaaaaa 61
||||||| |||||||||||||||||
Sbjct: 51 tttgaccgttcgtcttattcaaaaa 75
>49025_osa-miR806b:pmrd
Length = 215
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 186 aaaaagtcaacggtgtcatacattttga 213
|||||||||||||||||| |||||||||
Sbjct: 28 aaaaagtcaacggtgtcaaacattttga 1
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 gtttgaccattcgtcttattcaaaaa 61
||||||| ||||||||||||||||||
Sbjct: 37 gtttgactattcgtcttattcaaaaa 62
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 186 aaaaagtcaacggtgtcatacattttga 213
|||||||||||||||||| ||| |||||
Sbjct: 188 aaaaagtcaacggtgtcaaacagtttga 215
>51209_osa-miRf11994-akr:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 32 caacgtttgaccattcgtcttattcaaaaa 61
||||||||||||| | ||||||||||||||
Sbjct: 17 caacgtttgaccacttgtcttattcaaaaa 46
>49422_osa-miRf10207-akr:pmrd
Length = 165
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 36 gtttgaccattcgtcttattcaaaaa 61
||||||||| ||||||||||||||||
Sbjct: 153 gtttgaccactcgtcttattcaaaaa 128
>49027_osa-miR806d:pmrd
Length = 271
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 gtttgaccattcgtcttattcaaaaa 61
|||||||||||||| |||||||||||
Sbjct: 64 gtttgaccattcgttttattcaaaaa 89
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 186 aaaaagtcaacggtgtcatacatttt 211
|||||||||||||||||| |||||||
Sbjct: 214 aaaaagtcaacggtgtcaaacatttt 239
Score = 40.1 bits (20), Expect = 7e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 143 ttatataacttttttgaataagatgaatggtcaaac 178
|||| ||| |||||||||||| | ||||||||||||
Sbjct: 99 ttatttaaattttttgaataaaacgaatggtcaaac 64
