miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49190_osa-miR1884b:pmrd
Length = 221
Score = 438 bits (221), Expect = e-124
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 1 tctgtttttaaatgtatgacgctgttgacttttagatatatgttgacaattcgtcttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtttttaaatgtatgacgctgttgacttttagatatatgttgacaattcgtcttatt 60
Query: 61 caaaaaatcgagcaaatataaaaatataagtgaggcttaaggtatatttgatgataaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaaaaatcgagcaaatataaaaatataagtgaggcttaaggtatatttgatgataaaac 120
Query: 121 aagtcatggcaaaattaatgatacctgtataacttttttgagtaagacgagtggtcaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagtcatggcaaaattaatgatacctgtataacttttttgagtaagacgagtggtcaaac 180
Query: 181 gtagatttaaaagtcaacggtgtcatatatttataaatgga 221
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtagatttaaaagtcaacggtgtcatatatttataaatgga 221
>49189_osa-miR1884a:pmrd
Length = 214
Score = 63.9 bits (32), Expect = 5e-11
Identities = 89/108 (82%)
Strand = Plus / Plus
Query: 105 tatttgatgataaaacaagtcatggcaaaattaatgatacctgtataacttttttgagta 164
|||||||||||||||||||| | ||||| ||||||| | |||||||||||||| ||
Sbjct: 103 tatttgatgataaaacaagttacaataaaataaatgatatttatataacttttttgaata 162
Query: 165 agacgagtggtcaaacgtagatttaaaagtcaacggtgtcatatattt 212
||| || ||||||||||| ||||||||||||||||||| ||||
Sbjct: 163 agatgaatggtcaaacgttatgcaaaaagtcaacggtgtcatacattt 210
Score = 46.1 bits (23), Expect = 1e-05
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 155 tttttgagtaagacgagtggtcaaacgtagatttaaaagtcaacggtgtca 205
||||||| |||||||| ||||||||||| | | |||||||||||| ||||
Sbjct: 61 tttttgaataagacgaatggtcaaacgttgtatgaaaagtcaacggcgtca 11
>49422_osa-miRf10207-akr:pmrd
Length = 165
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 154 ttttttgagtaagacgagtggtcaaac 180
|||||||| ||||||||||||||||||
Sbjct: 127 ttttttgaataagacgagtggtcaaac 153
>49026_osa-miR806c:pmrd
Length = 270
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 ttgacaattcgtcttattcaaaaaat 68
||||| ||||||||||||||||||||
Sbjct: 206 ttgaccattcgtcttattcaaaaaat 181
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 attcgtcttattcaaaaaat 68
||||||||||||||||||||
Sbjct: 74 attcgtcttattcaaaaaat 93
>49024_osa-miR806a:pmrd
Length = 252
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 ttgacaattcgtcttattcaaaaaat 68
||||| ||||||||||||||||||||
Sbjct: 60 ttgaccattcgtcttattcaaaaaat 85
Score = 42.1 bits (21), Expect = 2e-04
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 154 ttttttgagtaagacgagtggtcaaacgtagatttaaaa-gtcaacggtgtca 205
|||||||| |||||||| ||||||||| |||||||| |||||||||||||
Sbjct: 84 ttttttgaataagacgaatggtcaaacacgtatttaaaaagtcaacggtgtca 32
>49025_osa-miR806b:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 ttgacaattcgtcttattcaaaaaa 67
||||| |||||||||||||||||||
Sbjct: 39 ttgactattcgtcttattcaaaaaa 63
>51209_osa-miRf11994-akr:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 155 tttttgagtaagacgagtggtcaaacgt 182
||||||| |||||| |||||||||||||
Sbjct: 46 tttttgaataagacaagtggtcaaacgt 19
>49031_osa-miR806h:pmrd
Length = 271
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 43 ttgacaattcgtcttattcaaaaa 66
||||| ||||||||||||||||||
Sbjct: 202 ttgaccattcgtcttattcaaaaa 179
>49029_osa-miR806f:pmrd
Length = 241
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 aaaagtcaacggtgtcatatattt 212
||||||||||||||||| ||||||
Sbjct: 201 aaaagtcaacggtgtcaaatattt 224
>49028_osa-miR806e:pmrd
Length = 255
Score = 40.1 bits (20), Expect = 7e-04
Identities = 51/60 (85%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 10 aaatgtatgacgctgttgacttttagatatatgtt-gacaattcgtcttattcaaaaaat 68
|||||| |||||| |||||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 25 aaatgtttgacgccgttgactttttagcatatgtttgaccgttcgtcttattcaaaaaat 84
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 aaaagtcaacggtgtcatatattt 212
||||||||||||||||| ||||||
Sbjct: 208 aaaagtcaacggtgtcaaatattt 231
>48794_oni-miR812:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 43 ttgacaattcgtcttattcaaaaa 66
||||| ||||||||||||||||||
Sbjct: 155 ttgaccattcgtcttattcaaaaa 132
