miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54630_sof-miR159c:pmrd
Length = 238
Score = 424 bits (214), Expect = e-119
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 1 tgaagacgacgacgaagaagaagatggcgaagaaaagtgatcgaagagctcccttcgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaagacgacgacgaagaagaagatggcgaagaaaagtgatcgaagagctcccttcgatc 60
Query: 61 caatccaggaggggaagtggtcggttgcagctgccggttcatggatgcctctctggtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caatccaggaggggaagtggtcggttgcagctgccggttcatggatgcctctctggtgca 120
Query: 121 gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacccgggagatgaacccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacccgggagatgaacccac 180
Query: 181 catcatctttccctcgtgcttggattgaagggag 214
||||||||||||||||||||||||||||||||||
Sbjct: 181 catcatctttccctcgtgcttggattgaagggag 214
>54403_sbi-miR159b:pmrd
Length = 253
Score = 359 bits (181), Expect = e-100
Identities = 205/213 (96%)
Strand = Plus / Plus
Query: 2 gaagacgacgacgaagaagaagatggcgaagaaaagtgatcgaagagctcccttcgatcc 61
||||| |||||||| || ||||| |||||||||||| || | ||||||||||||||||||
Sbjct: 17 gaagaagacgacgacgatgaagaaggcgaagaaaagcgaacaaagagctcccttcgatcc 76
Query: 62 aatccaggaggggaagtggtcggttgcagctgccggttcatggatgcctctctggtgcag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 aatccaggaggggaagtggtcggttgcagctgccggttcatggatgcctctctggtgcag 136
Query: 122 caatgactaatgctcacctgcacttgcatgggtgtgcatgacccgggagatgaacccacc 181
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 caatgactgatgctcacctgcacttgcatgggtgtgcatgacccgggagatgaacccacc 196
Query: 182 atcatctttccctcgtgcttggattgaagggag 214
|||||||||||||||||||||||||||||||||
Sbjct: 197 atcatctttccctcgtgcttggattgaagggag 229
>54643_sof-miR319b:pmrd
Length = 176
Score = 339 bits (171), Expect = 6e-94
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 44 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 104 gatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgac 120
Query: 164 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 171
>54932_zma-miR159c:pmrd
Length = 217
Score = 278 bits (140), Expect = 2e-75
Identities = 176/187 (94%), Gaps = 2/187 (1%)
Strand = Plus / Plus
Query: 30 aagaaaagtgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgca 89
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aagaaaggcgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgca 66
Query: 90 gctgccggttcatggatgcctctctggtgcagcaatgactaatgctcac--ctgcacttg 147
||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||
Sbjct: 67 gctgccggttcatggatacctctctggtgcagcaatggccgctgctcacctctgcacttg 126
Query: 148 catgggtgtgcatgacccgggagatgaacccaccatcatctttccctcgtgcttggattg 207
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 127 catgggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattg 186
Query: 208 aagggag 214
|||||||
Sbjct: 187 aagggag 193
>54936_zma-miR159g:pmrd
Length = 180
Score = 268 bits (135), Expect = 2e-72
Identities = 165/174 (94%), Gaps = 2/174 (1%)
Strand = Plus / Plus
Query: 43 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 60
Query: 103 ggatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcat 160
|||| ||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct: 61 ggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcat 120
Query: 161 gacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 174
>54933_zma-miR159d:pmrd
Length = 217
Score = 268 bits (135), Expect = 2e-72
Identities = 168/178 (94%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 39 gatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggt 98
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 16 gatcgaagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggt 75
Query: 99 tcatggatgcctctctggtgcagcaatgac--taatgctcacctgcacttgcatgggtgt 156
|||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 76 tcatggatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgt 135
Query: 157 gcatgacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 136 gcatgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggag 193
>55054_zma-miR319m:pmrd
Length = 178
Score = 266 bits (134), Expect = 7e-72
Identities = 164/173 (94%), Gaps = 2/173 (1%)
Strand = Plus / Plus
Query: 44 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 104 gatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatg 161
||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 61 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 120
Query: 162 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 173
>54935_zma-miR159f:pmrd
Length = 181
Score = 230 bits (116), Expect = 4e-61
Identities = 162/175 (92%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 43 gaagagctcccttcgatccaatccagg-aggggaagtggtcggttgcagctgccggttca 101
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttca 60
Query: 102 tggatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgca 159
||||| | ||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct: 61 tggatacttctctggtgcagcaatggccgcagctcacctctgcacttgcatgggtgtgca 120
Query: 160 tgacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 tgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 175
>48824_osa-miR159f:pmrd
Length = 188
Score = 125 bits (63), Expect = 2e-29
Identities = 143/169 (84%), Gaps = 8/169 (4%)
Strand = Plus / Plus
Query: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 106 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 165
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
Query: 166 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
|||||||||||||||||| |||| | || ||||||||||||||||||
Sbjct: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggag 173
>48821_osa-miR159c:pmrd
Length = 197
Score = 91.7 bits (46), Expect = 2e-19
Identities = 140/170 (82%), Gaps = 1/170 (0%)
Strand = Plus / Plus
Query: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 106 tgcctctctggtgca-gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacc 164
| ||||| ||||| | | | | || ||||||||||||||||| |||||||||
Sbjct: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
Query: 165 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
||||||||||||||||||| |||| | || || |||||||||||||||
Sbjct: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggag 182
>48823_osa-miR159e:pmrd
Length = 191
Score = 85.7 bits (43), Expect = 1e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 43 gaagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttca 101
||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
Query: 102 tggatgcctct 112
||||| |||||
Sbjct: 70 tggatacctct 80
>48822_osa-miR159d:pmrd
Length = 189
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 106 tgcctct 112
| |||||
Sbjct: 73 tacctct 79
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 138 cctgcacttgcatgggtgtgcatgacccgggagatgaacc 177
||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacc 137
