miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54631_sof-miR159d:pmrd
Length = 265
Score = 525 bits (265), Expect = e-150
Identities = 265/265 (100%)
Strand = Plus / Plus
Query: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
Query: 61 ttgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
Query: 121 ttttcgagagggaggagaggagctagactctcatgggggtcgtctatgagatacgcttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttcgagagggaggagaggagctagactctcatgggggtcgtctatgagatacgcttgt 180
Query: 181 ggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaaggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaaggga 240
Query: 241 gctctgcatcctgatccatccatcc 265
|||||||||||||||||||||||||
Sbjct: 241 gctctgcatcctgatccatccatcc 265
>54628_sof-miR159a:pmrd
Length = 265
Score = 494 bits (249), Expect = e-140
Identities = 261/265 (98%)
Strand = Plus / Plus
Query: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
Query: 61 ttgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
Query: 121 ttttcgagagggaggagaggagctagactctcatgggggtcgtctatgagatacgcttgt 180
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct: 121 ttttcgagagggaggagaggagctagactctcatggtggtcgtctttgagataggcttgt 180
Query: 181 ggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaaggga 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 240
Query: 241 gctctgcatcctgatccatccatcc 265
|||||||||||||||||||||||||
Sbjct: 241 gctctgcatcctgatccatccatcc 265
>54629_sof-miR159b:pmrd
Length = 266
Score = 456 bits (230), Expect = e-129
Identities = 258/266 (96%), Gaps = 1/266 (0%)
Strand = Plus / Plus
Query: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
Query: 61 ttgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
Query: 121 ttttc-gagagggaggagaggagctagactctcatgggggtcgtctatgagatacgcttg 179
||||| |||||||||||||||||||||||||||| || |||||||| ||||||| |||||
Sbjct: 121 ttttcggagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttg 180
Query: 180 tggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaaggg 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggg 240
Query: 240 agctctgcatcctgatccatccatcc 265
||||||||||||||| ||||||||||
Sbjct: 241 agctctgcatcctgaaccatccatcc 266
>54632_sof-miR159e:pmrd
Length = 264
Score = 438 bits (221), Expect = e-123
Identities = 256/265 (96%), Gaps = 2/265 (0%)
Strand = Plus / Plus
Query: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
Query: 62 tgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
Query: 122 tttcgagagggaggagaggagctagactctcatgggggtcgtctatgagatacgcttgtg 181
|||||||||||||||||||||||||||||||| || |||||||| ||||||| |||||||
Sbjct: 121 tttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtg 180
Query: 182 gtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaagggag 241
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 240
Query: 242 ctc-tgcatcctgatccatccatcc 265
||| ||||| |||||||||||||||
Sbjct: 241 ctcttgcat-ctgatccatccatcc 264
>54930_zma-miR159a:pmrd
Length = 246
Score = 165 bits (83), Expect = 2e-41
Identities = 95/99 (95%)
Strand = Plus / Plus
Query: 160 tcgtctatgagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctgg 219
|||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 141 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 200
Query: 220 ccgctctttggattgaagggagctctgcatcctgatcca 258
|||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgctctttggattgaagggagctctgcatcctgatcca 239
Score = 151 bits (76), Expect = 3e-37
Identities = 95/100 (95%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttg-ttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| || ||||
Sbjct: 9 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 68
Query: 68 gctgctcgttcatggttcccactatcctatctcatcatgt 107
||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gctgctcgttcatggttcccactatcctatctcatcatgt 108
>51338_pgl-miR159:pmrd
Length = 226
Score = 135 bits (68), Expect = 2e-32
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 167 tgagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctct 226
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 147 tgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctct 206
Query: 227 ttggattgaagggagctctg 246
||||||||||||||||||||
Sbjct: 207 ttggattgaagggagctctg 226
Score = 77.8 bits (39), Expect = 4e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 21 cggagctcctatcattccaatgaagggccgttctgaagggttgttcc-gctgctcgttca 79
|||||||||||||||||||||||| || ||| | |||||| | | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 80 tggttcccactatcctatctcat 102
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54392_sar-miR159:pmrd
Length = 175
Score = 101 bits (51), Expect = 3e-22
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 168 gagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctt 227
|||||| || ||||| |||||||||||| |||| ||| |||||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 228 tggattgaagggagctctg 246
|||||||||||||||||||
Sbjct: 157 tggattgaagggagctctg 175
Score = 65.9 bits (33), Expect = 1e-11
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 22 ggagctcctatcattccaatgaagggccgttct-gaagggttgttcc-gctgctcgttca 79
||||||||||||||||||||||| || | | || |||||| || | | ||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 80 tggttcccactatccta 96
|||||||||||||||||
Sbjct: 62 tggttcccactatccta 78
>54931_zma-miR159b:pmrd
Length = 221
Score = 89.7 bits (45), Expect = 1e-18
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 175 gcttgtggtttgcatgaccgatgagctgcaccgtcccctt-gctggccgctctttggatt 233
||||||||||||||||||||| |||||||| ||||||||| | || ||||| ||||||||
Sbjct: 131 gcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgctgtttggatt 189
Query: 234 gaagggagctctgcatc 250
|||||||||||||||||
Sbjct: 190 gaagggagctctgcatc 206
Score = 58.0 bits (29), Expect = 4e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatca 104
||||||||||||||||||||||| ||| |||||||||
Sbjct: 68 gctgctcgttcatggttcccactgtcccatctcatca 104
>54673_tae-miR159a:pmrd
Length = 177
Score = 87.7 bits (44), Expect = 4e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 22 ggagctcctatcattccaatgaagggccgttctgaagggtt-gttccgctgctcgttcat 80
|||||||||||||||||||||||||| | | |||||||| || | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 81 ggttcccactatcctatctc 100
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
Score = 71.9 bits (36), Expect = 2e-13
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 178 tgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaag 237
|||||||||||||||||| |||| || || |||| |||| ||||| ||||||||||||
Sbjct: 106 tgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtttggattgaag 165
Query: 238 ggagctctgcat 249
||||||||||||
Sbjct: 166 ggagctctgcat 177
>48820_osa-miR159b:pmrd
Length = 188
Score = 81.8 bits (41), Expect = 2e-16
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 168 gagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctt 227
|||||| ||||||||||||||||||| | |||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 228 tggattgaagggagctctgcatcctgatc 256
||||||||||||||||||||||| |||||
Sbjct: 160 tggattgaagggagctctgcatcttgatc 188
Score = 61.9 bits (31), Expect = 2e-10
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 16 tgaagcggagctcctatcattccaatgaagggccgttctgaagggttgttccgctgctcg 75
||||| ||||||||| || |||||||||| || |||||||||| | | |||||| |
Sbjct: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
Query: 76 ttcatggttcccactatcctatctcat 102
||||||||||||||||| |||||||||
Sbjct: 66 ttcatggttcccactattctatctcat 92
>48657_hvv-miR159b:pmrd
Length = 174
Score = 79.8 bits (40), Expect = 1e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 22 ggagctcctatcattccaatgaagggccgttctgaagggtt-gttccgctgctcgttcat 80
|||||||||||||||||||||||||| | | |||||||| || | |||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 61
Query: 81 ggttcccactatcctatctc 100
||||||||||||||||||||
Sbjct: 62 ggttcccactatcctatctc 81
Score = 69.9 bits (35), Expect = 9e-13
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 168 gagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctt 227
|||||| ||||||||||||||||| ||| |||| || || |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 228 tggattgaagggagctctg 246
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctctg 174
>54934_zma-miR159e:pmrd
Length = 203
Score = 75.8 bits (38), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 175 gcttgtggtttgcatgaccgatgagctgcaccgtcccctt-gctggccgctctttggatt 233
||||||||||||||||||||| ||||||| ||||||||| | || ||||| |||||| |
Sbjct: 130 gcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgtttggagt 189
Query: 234 gaagggagctctgc 247
||||||||||||||
Sbjct: 190 gaagggagctctgc 203
Score = 58.0 bits (29), Expect = 4e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatca 104
||||||||||||||||||||||| ||| |||||||||
Sbjct: 50 gctgctcgttcatggttcccactgtcccatctcatca 86
>54653_spr-miR159:pmrd
Length = 392
Score = 75.8 bits (38), Expect = 2e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctctgcatcctgatccatccat 263
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatccatccat 38
>54937_zma-miR159m:pmrd
Length = 457
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctctgcatcctgatcca 258
|||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatcca 33
>54674_tae-miR159b:pmrd
Length = 255
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 223 ctctttggattgaagggagctctgcatc 250
||||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgcatc 254
>48819_osa-miR159a:pmrd
Length = 272
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 223 ctctttggattgaagggagctctgcatc 250
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48796_oru-miR159:pmrd
Length = 274
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 223 ctctttggattgaagggagctctgcatc 250
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48656_hvv-miR159a:pmrd
Length = 303
Score = 54.0 bits (27), Expect = 6e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctctgcatcctgatc 256
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcttgatc 31
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 ctctttggattgaagggagctctg 246
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>46932_ath-miR159b:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctctgcatc 250
|||||||||||||||||||||| ||||
Sbjct: 166 tctttggattgaagggagctcttcatc 192
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctct 245
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctct 245
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctct 245
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctct 245
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctct 245
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctct 245
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 224 tctttggattgaagggagctct 245
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctctgcatc 250
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacatc 25
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctct 245
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctct 245
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctct 245
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctct 245
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctct 245
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctct 245
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 227 ttggattgaagggagctctgcatc 250
||||||||||||||||||| ||||
Sbjct: 1 ttggattgaagggagctctacatc 24
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 226 tttggattgaagggagctct 245
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
