miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54645_sof-miR396:pmrd
Length = 134
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1 agatggccttctttgtgatcttccacagctttcttgaactgcatctctaagaggagcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatggccttctttgtgatcttccacagctttcttgaactgcatctctaagaggagcagc 60
Query: 61 tcgaagcctcgaactctacctgcatgagcaggtgcagttcaataaagctgtgggaaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgaagcctcgaactctacctgcatgagcaggtgcagttcaataaagctgtgggaaactg 120
Query: 121 cagagagaggccaa 134
||||||||||||||
Sbjct: 121 cagagagaggccaa 134
>54486_sbi-miR396b:pmrd
Length = 128
Score = 202 bits (102), Expect = 5e-53
Identities = 127/134 (94%), Gaps = 6/134 (4%)
Strand = Plus / Plus
Query: 1 agatggccttctttgtgatcttccacagctttcttgaactgcatctctaagaggagcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatggccttctttgtgatcttccacagctttcttgaactgcatctctaagaggagcagc 60
Query: 61 tcgaagcctcgaactctacctgcatgagcaggtgcagttcaataaagctgtgggaaactg 120
| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgaa--ct----ctctacctgcatgagcaggtgcagttcaataaagctgtgggaaactg 114
Query: 121 cagagagaggccaa 134
||||||||||||||
Sbjct: 115 cagagagaggccaa 128
>55073_zma-miR396b:pmrd
Length = 136
Score = 123 bits (62), Expect = 3e-29
Identities = 121/139 (87%), Gaps = 10/139 (7%)
Strand = Plus / Plus
Query: 1 agatggccttctttgtgatcttccacagctttcttgaactgcatctctaagaggagcagc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 1 agatggccttctttgtgatcttccacagctttcttgaactgcatctctcagaggagcggc 60
Query: 61 tcgaagcctcga--actctacctgcatgagcagg----tgcagttcaataaagctgtggg 114
||| || | ||| ||| |||| |||||| ||||||||||||||||||||||
Sbjct: 61 ----agcttcaactcctccacccgcatcagcaggtgcatgcagttcaataaagctgtggg 116
Query: 115 aaactgcagagagaggcca 133
|||||||||||||||||||
Sbjct: 117 aaactgcagagagaggcca 135
>55072_zma-miR396a:pmrd
Length = 137
Score = 79.8 bits (40), Expect = 5e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 94 gcagttcaataaagctgtgggaaactgcagagagaggcca 133
||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gcagttcaataaagctgtgggaaactgcagagagaggcca 136
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgcat 44
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
>55083_zma-miR396l:pmrd
Length = 97
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcatctctaagaggagc 57
|||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ttccacagctttcttgaactgcatctctcagaggagc 37
>48945_osa-miR396a:pmrd
Length = 154
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 11 ctttgtgatcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtgatcttccacagctttcttgaactgca 33
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 94 gcagttcaataaagctgtgggaaactgcagag 125
|||||||||||||||||||||||| |||||||
Sbjct: 123 gcagttcaataaagctgtgggaaattgcagag 154
>54485_sbi-miR396a:pmrd
Length = 125
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 94 gcagttcaataaagctgtgggaaactgcagagagag 129
|||||||||||||||||||||||| |||||||||||
Sbjct: 85 gcagttcaataaagctgtgggaaattgcagagagag 120
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgcat 44
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
>48946_osa-miR396b:pmrd
Length = 116
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 11 ctttgtgatcttccacagctttcttgaactgcatct 46
||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ctttgtggtcttccacagctttcttgaactgcatct 36
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 92 gtgcagttcaataaagctgtgggaaa 117
||||||||||||||||||||||||||
Sbjct: 83 gtgcagttcaataaagctgtgggaaa 108
>55079_zma-miR396h:pmrd
Length = 116
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 18 atcttccacagctttcttgaactgcatc 45
||||||||||||||||||||||||||||
Sbjct: 1 atcttccacagctttcttgaactgcatc 28
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 gcagttcaataaagctgtgggaaa 117
||||||||||||||||||||||||
Sbjct: 92 gcagttcaataaagctgtgggaaa 115
>54870_vvi-miR396c:pmrd
Length = 108
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtgatcttccacagctttcttgaactg 41
||||||||||||||||||||||||||||
Sbjct: 4 tgtgatcttccacagctttcttgaactg 31
>48578_gma-miR396a:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtattcttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gttcaataaagctgtgggaa 116
||||||||||||||||||||
Sbjct: 103 gttcaataaagctgtgggaa 122
>48680_lja-miR396:pmrd
Length = 108
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 10 tctttgtgatcttccacagctttcttgaactgcat 44
||||||| ||||||||||||||||||||||||||
Sbjct: 5 tctttgtattcttccacagctttcttgaactgcat 39
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gttcaataaagctgtgggaa 116
||||||||||||||||||||
Sbjct: 76 gttcaataaagctgtgggaa 95
>55074_zma-miR396c:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgcat 44
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 94 gcagttcaataaagctgtgggaaac 118
|||||||||||||||||||||||||
Sbjct: 80 gcagttcaataaagctgtgggaaac 104
>54871_vvi-miR396d:pmrd
Length = 120
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgcat 44
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gttcaataaagctgtgggaa 116
||||||||||||||||||||
Sbjct: 90 gttcaataaagctgtgggaa 109
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||
Sbjct: 7 tcttccacagctttcttgaactgca 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 90 aggtgcagttcaataaagctgtgg 113
||||||||||||| ||||||||||
Sbjct: 34 aggtgcagttcaagaaagctgtgg 11
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gttcaataaagctgtgggaa 116
||||||||||||||||||||
Sbjct: 104 gttcaataaagctgtgggaa 123
>51735_ptc-miR396b:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 90 aggtgcagttcaataaagctgtgg 113
||||||||||||| ||||||||||
Sbjct: 36 aggtgcagttcaagaaagctgtgg 13
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gttcaataaagctgtgggaa 116
||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaa 125
>51734_ptc-miR396a:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 90 aggtgcagttcaataaagctgtgg 113
||||||||||||| ||||||||||
Sbjct: 36 aggtgcagttcaagaaagctgtgg 13
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gttcaataaagctgtgggaa 116
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>48485_gcl-miR396a:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaactgcatc 45
|||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatc 77
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||
Sbjct: 16 tcttccacagctttcttgaactgca 40
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gttcaataaagctgtgggaa 116
||||||||||||||||||||
Sbjct: 130 gttcaataaagctgtgggaa 149
>47008_ath-miR396a:pmrd
Length = 151
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gttcaataaagctgtgggaa 116
||||||||||||||||||||
Sbjct: 123 gttcaataaagctgtgggaa 142
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcat 44
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 gcagttcaataaagctgtggga 115
||||||||||||||||||||||
Sbjct: 77 gcagttcaataaagctgtggga 98
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcat 44
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>46887_aqc-miR396a:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcat 44
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 gttcaataaagctgtgggaaa 117
|||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaaa 122
>55082_zma-miR396k:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgcagttcaataaagctgtggga 115
|||||||||||||||||||||||
Sbjct: 76 tgcagttcaataaagctgtggga 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgca 43
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgca 43
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48486_gcl-miR396b:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcatc 45
||||| |||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcatc 25
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
