miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54403_sbi-miR159b:pmrd
Length = 253
Score = 337 bits (170), Expect = 2e-93
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
Query: 123 cctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccgg 182
Query: 183 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
>54643_sof-miR319b:pmrd
Length = 176
Score = 329 bits (166), Expect = 6e-91
Identities = 169/170 (99%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 64
Query: 123 cctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccgg 182
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 65 cctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgacccgg 124
Query: 183 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 174
>54630_sof-miR159c:pmrd
Length = 238
Score = 329 bits (166), Expect = 6e-91
Identities = 169/170 (99%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 107
Query: 123 cctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccgg 182
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 108 cctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgacccgg 167
Query: 183 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 217
>55054_zma-miR319m:pmrd
Length = 178
Score = 272 bits (137), Expect = 1e-73
Identities = 164/172 (95%), Gaps = 2/172 (1%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggata 64
Query: 123 cctctctggtgcagcaatgactgatgctcac--ctgcacttgcatgggtgtgcatgaccc 180
||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||
Sbjct: 65 cctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatgaccc 124
Query: 181 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 176
>54936_zma-miR159g:pmrd
Length = 180
Score = 272 bits (137), Expect = 1e-73
Identities = 164/172 (95%), Gaps = 2/172 (1%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggata 65
Query: 123 cctctctggtgcagcaatgactgatgctcac--ctgcacttgcatgggtgtgcatgaccc 180
||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||
Sbjct: 66 cctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatgaccc 125
Query: 181 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 177
>54932_zma-miR159c:pmrd
Length = 217
Score = 272 bits (137), Expect = 1e-73
Identities = 164/172 (95%), Gaps = 2/172 (1%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggata 84
Query: 123 cctctctggtgcagcaatgactgatgctcac--ctgcacttgcatgggtgtgcatgaccc 180
||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||
Sbjct: 85 cctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatgaccc 144
Query: 181 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 196
>54933_zma-miR159d:pmrd
Length = 217
Score = 264 bits (133), Expect = 3e-71
Identities = 163/172 (94%), Gaps = 2/172 (1%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 25 gctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatggata 84
Query: 123 cctctctggtgcagcaatgactga--tgctcacctgcacttgcatgggtgtgcatgaccc 180
||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 85 cctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatgaccc 144
Query: 181 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
|||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
>54935_zma-miR159f:pmrd
Length = 181
Score = 234 bits (118), Expect = 3e-62
Identities = 161/173 (93%), Gaps = 3/173 (1%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccagg-aggggaagtggtcggttgcagctgccggttcatggat 121
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 6 gctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttcatggat 65
Query: 122 gcctctctggtgcagcaatgactgatgctcacct--gcacttgcatgggtgtgcatgacc 179
| ||||||||||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct: 66 acttctctggtgcagcaatggccgcagctcacctctgcacttgcatgggtgtgcatgacc 125
Query: 180 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 178
>48824_osa-miR159f:pmrd
Length = 188
Score = 127 bits (64), Expect = 4e-30
Identities = 144/170 (84%), Gaps = 8/170 (4%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
|||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct: 15 gctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatggata 74
Query: 123 cctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccgg 182
||||| ||||| || | | ||| ||||||||||||||| ||||||||||||
Sbjct: 75 cctctgcagtgca----tgtcgtaggct----tgcacttgcatgggtttgcatgacccgg 126
Query: 183 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
|||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 127 gagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>48821_osa-miR159c:pmrd
Length = 197
Score = 101 bits (51), Expect = 3e-22
Identities = 142/171 (83%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
||||| ||||||||||| |||||| ||||||||| || ||||||||||| |||||||||
Sbjct: 15 gctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatggata 74
Query: 123 cctctctggtgca-gcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccg 181
||||| ||||| | | | || || ||||||||||||||||| |||||||||||
Sbjct: 75 cctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacccg 134
Query: 182 ggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||||||||||| |||| | || || ||||||||||||||||||
Sbjct: 135 ggagatgaacccaccattgtcttcctctattgattggattgaagggagctc 185
>48822_osa-miR159d:pmrd
Length = 189
Score = 81.8 bits (41), Expect = 2e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
||||| ||||||||||| |||||| ||||||||| || |||||||||||||||||||||
Sbjct: 15 gctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatggata 74
Query: 123 cctct 127
|||||
Sbjct: 75 cctct 79
Score = 63.9 bits (32), Expect = 6e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 153 cctgcacttgcatgggtgtgcatgacccgggagatgaacc 192
||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacc 137
>48823_osa-miR159e:pmrd
Length = 191
Score = 77.8 bits (39), Expect = 4e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 69 ttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatgcctct 127
||||||||||| |||||| ||||||||| || ||||||||||||||||||||| |||||
Sbjct: 22 ttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacctct 80
