miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54411_sbi-miR164b:pmrd
          Length = 111

 Score =  220 bits (111), Expect = 2e-58
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggggcgagcaaaccgtgctggagaagcagggcacgtgctcgtcgtcgctgcatgcgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaggggcgagcaaaccgtgctggagaagcagggcacgtgctcgtcgtcgctgcatgcgtg 60

                                                              
Query: 61  gtcgtcgtcgcagcacgtgcgctccttctccaacatggcttctcgccccca 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtcgtcgtcgcagcacgtgcgctccttctccaacatggcttctcgccccca 111




>48841_osa-miR164d:pmrd
          Length = 94

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 11 caaaccgtgctggagaagcagggcacgtgctcg 43
          |||||||||||||||||||||||||||||||||
Sbjct: 1  caaaccgtgctggagaagcagggcacgtgctcg 33



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 70  gcagcacgtgcgctccttctccaacatggcttc 102
           |||||| |||||||||||||||| |||||||||
Sbjct: 62  gcagcatgtgcgctccttctccagcatggcttc 94




>51862_ptc-miRf10040-akr:pmrd
          Length = 91

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 18 tgctggagaagcagggcacgtgc 40
          |||||||||||||||||||||||
Sbjct: 80 tgctggagaagcagggcacgtgc 58




>51621_ptc-miR164c:pmrd
          Length = 82

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 tgctggagaagcagggcacgtgc 40
          |||||||||||||||||||||||
Sbjct: 8  tgctggagaagcagggcacgtgc 30




>51619_ptc-miR164a:pmrd
          Length = 85

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 tgctggagaagcagggcacgtgc 40
          |||||||||||||||||||||||
Sbjct: 8  tgctggagaagcagggcacgtgc 30




>54952_zma-miR164d:pmrd
          Length = 216

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 gctggagaagcagggcacgtgc 40
          ||||||||||||||||||||||
Sbjct: 18 gctggagaagcagggcacgtgc 39




>54949_zma-miR164a:pmrd
          Length = 152

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 gctggagaagcagggcacgtgc 40
          ||||||||||||||||||||||
Sbjct: 17 gctggagaagcagggcacgtgc 38




>54786_vvi-miR164b:pmrd
          Length = 93

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 12 aaaccgtgctggagaagcagggcacgtgct 41
          ||||| ||||||||||||||||||| ||||
Sbjct: 2  aaaccatgctggagaagcagggcacatgct 31




>51622_ptc-miR164d:pmrd
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 gctggagaagcagggcacgtgc 40
          ||||||||||||||||||||||
Sbjct: 9  gctggagaagcagggcacgtgc 30




>54950_zma-miR164b:pmrd
          Length = 128

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 16 cgtgctggagaagcagggcacgtgc 40
          |||| ||||||||||||||||||||
Sbjct: 16 cgtggtggagaagcagggcacgtgc 40




>54956_zma-miR164h:pmrd
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgc 23




>54955_zma-miR164g:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgc 20




>54954_zma-miR164f:pmrd
          Length = 177

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgc 20




>54953_zma-miR164e:pmrd
          Length = 242

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgc 23




>54951_zma-miR164c:pmrd
          Length = 270

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgc 37




>54788_vvi-miR164d:pmrd
          Length = 118

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>54787_vvi-miR164c:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>54785_vvi-miR164a:pmrd
          Length = 121

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>54676_tae-miR164b:pmrd
          Length = 152

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgc 20




>54414_sbi-miR164e:pmrd
          Length = 205

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgc 22




>54413_sbi-miR164d:pmrd
          Length = 160

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgc 20




>54410_sbi-miR164:pmrd
          Length = 126

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgc 20




>53142_ptc-miRf11320-akr:pmrd
          Length = 167

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgc 34




>52901_ptc-miRf11079-akr:pmrd
          Length = 171

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgc 34




>51624_ptc-miR164f:pmrd
          Length = 90

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 18 tgctggagaagcagggcacgtgct 41
          ||||||||||||||||||| ||||
Sbjct: 8  tgctggagaagcagggcacatgct 31




>51623_ptc-miR164e:pmrd
          Length = 155

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>51620_ptc-miR164b:pmrd
          Length = 162

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>51348_ppl-miR164:pmrd
          Length = 159

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>50414_osa-miRf11199-akr:pmrd
          Length = 146

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 13 tggagaagcagggcacgtgc 32




>48843_osa-miR164f:pmrd
          Length = 210

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 24 tggagaagcagggcacgtgc 43




>48839_osa-miR164b:pmrd
          Length = 109

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 9  tggagaagcagggcacgtgc 28




>48838_osa-miR164a:pmrd
          Length = 156

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 17 tggagaagcagggcacgtgc 36




>48710_mtr-miR164c:pmrd
          Length = 86

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgc 25




>48709_mtr-miR164b:pmrd
          Length = 144

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgc 25




>48708_mtr-miR164a:pmrd
          Length = 99

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgc 25




>48547_gma-miR164:pmrd
          Length = 95

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>48473_csi-miR164:pmrd
          Length = 168

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgc 20




>48419_cav-miR164:pmrd
          Length = 95

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>48398_bra-miR164a:pmrd
          Length = 92

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 10 tggagaagcagggcacgtgc 29




>48341_bna-miR164:pmrd
          Length = 86

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 7  tggagaagcagggcacgtgc 26




>47540_ath-miRf10440-akr:pmrd
          Length = 113

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 95 tggagaagcagggcacgtgc 76




>47539_ath-miRf10439-akr:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 96 tggagaagcagggcacgtgc 77




>47347_ath-miRf10247-akr:pmrd
          Length = 159

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgc 25




>46942_ath-miR164c:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>46941_ath-miR164b:pmrd
          Length = 153

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgc 22




>46940_ath-miR164a:pmrd
          Length = 113

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagaagcagggcacgtgc 40
          ||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgc 38