miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54414_sbi-miR164e:pmrd
          Length = 205

 Score =  406 bits (205), Expect = e-114
 Identities = 205/205 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttggagaagcagggcacgtgcagagacacgccggccggagcacggccgccgccgataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttggagaagcagggcacgtgcagagacacgccggccggagcacggccgccgccgataga 60

                                                                       
Query: 61  tcgacctcgcactcgcactcgcacaccagctgcgtctgcgtgtggatgaggtcgagatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcgacctcgcactcgcactcgcacaccagctgcgtctgcgtgtggatgaggtcgagatcg 120

                                                                       
Query: 121 tcgtcggtcgaagctagcgaggaacctcttgcttgttgcttcacccgctagctcctgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgtcggtcgaagctagcgaggaacctcttgcttgttgcttcacccgctagctcctgcac 180

                                    
Query: 181 tgcacgtgctccccttctccaccat 205
           |||||||||||||||||||||||||
Sbjct: 181 tgcacgtgctccccttctccaccat 205




>54785_vvi-miR164a:pmrd
          Length = 121

 Score = 50.1 bits (25), Expect = 7e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  gttggagaagcagggcacgtgcaga 25
          |||||||||||||||||||||||||
Sbjct: 9  gttggagaagcagggcacgtgcaga 33



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 tgcacgtgctccccttctcca 201
           |||||||||||||||||||||
Sbjct: 89  tgcacgtgctccccttctcca 109




>48840_osa-miR164c:pmrd
          Length = 119

 Score = 50.1 bits (25), Expect = 7e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 181 tgcacgtgctccccttctccaccat 205
           |||||||||||||||||||||||||
Sbjct: 89  tgcacgtgctccccttctccaccat 113




>54788_vvi-miR164d:pmrd
          Length = 118

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 175 ctgcactgcacgtgctccccttctcca 201
           |||| ||||||||||||||||||||||
Sbjct: 80  ctgctctgcacgtgctccccttctcca 106



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 3  tggagaagcagggcacgtgcag 24
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcag 32




>50414_osa-miRf11199-akr:pmrd
          Length = 146

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 11 gttggagaagcagggcacgtgca 33




>48838_osa-miR164a:pmrd
          Length = 156

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 15 gttggagaagcagggcacgtgca 37




>48710_mtr-miR164c:pmrd
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 4  gttggagaagcagggcacgtgca 26




>48708_mtr-miR164a:pmrd
          Length = 99

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 4  gttggagaagcagggcacgtgca 26



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 tgcacgtgctccccttctcca 201
           |||||||||||||||||||||
Sbjct: 73  tgcacgtgctccccttctcca 93




>48547_gma-miR164:pmrd
          Length = 95

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 9  gttggagaagcagggcacgtgca 31



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 tgcacgtgctccccttctcca 201
           |||||||||||||||||||||
Sbjct: 65  tgcacgtgctccccttctcca 85




>48419_cav-miR164:pmrd
          Length = 95

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 9  gttggagaagcagggcacgtgca 31



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 tgcacgtgctccccttctcca 201
           |||||||||||||||||||||
Sbjct: 65  tgcacgtgctccccttctcca 85




>48398_bra-miR164a:pmrd
          Length = 92

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 8  gttggagaagcagggcacgtgca 30




>48341_bna-miR164:pmrd
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 5  gttggagaagcagggcacgtgca 27




>47540_ath-miRf10440-akr:pmrd
          Length = 113

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 97 gttggagaagcagggcacgtgca 75




>47539_ath-miRf10439-akr:pmrd
          Length = 115

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 98 gttggagaagcagggcacgtgca 76




>46940_ath-miR164a:pmrd
          Length = 113

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  gttggagaagcagggcacgtgca 23
          |||||||||||||||||||||||
Sbjct: 17 gttggagaagcagggcacgtgca 39




>54956_zma-miR164h:pmrd
          Length = 96

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgca 24




>54955_zma-miR164g:pmrd
          Length = 116

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54954_zma-miR164f:pmrd
          Length = 177

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54953_zma-miR164e:pmrd
          Length = 242

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgca 24




>54952_zma-miR164d:pmrd
          Length = 216

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 20 tggagaagcagggcacgtgca 40




>54951_zma-miR164c:pmrd
          Length = 270

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgca 38




>54950_zma-miR164b:pmrd
          Length = 128

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgca 41




>54949_zma-miR164a:pmrd
          Length = 152

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgca 39




>54787_vvi-miR164c:pmrd
          Length = 97

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>54676_tae-miR164b:pmrd
          Length = 152

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54413_sbi-miR164d:pmrd
          Length = 160

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54410_sbi-miR164:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>53142_ptc-miRf11320-akr:pmrd
          Length = 167

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgca 35




>52901_ptc-miRf11079-akr:pmrd
          Length = 171

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgca 35




>51862_ptc-miRf10040-akr:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 77 tggagaagcagggcacgtgca 57




>51623_ptc-miR164e:pmrd
          Length = 155

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51622_ptc-miR164d:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51621_ptc-miR164c:pmrd
          Length = 82

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 tgcacgtgctccccttctcca 201
           |||||||||||||||||||||
Sbjct: 54  tgcacgtgctccccttctcca 74




>51620_ptc-miR164b:pmrd
          Length = 162

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51619_ptc-miR164a:pmrd
          Length = 85

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51348_ppl-miR164:pmrd
          Length = 159

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>48843_osa-miR164f:pmrd
          Length = 210

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 24 tggagaagcagggcacgtgca 44




>48839_osa-miR164b:pmrd
          Length = 109

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 9  tggagaagcagggcacgtgca 29




>48709_mtr-miR164b:pmrd
          Length = 144

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgca 26




>48473_csi-miR164:pmrd
          Length = 168

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>47347_ath-miRf10247-akr:pmrd
          Length = 159

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgca 26




>46941_ath-miR164b:pmrd
          Length = 153

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 3  tggagaagcagggcacgtgca 23
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23




>54411_sbi-miR164b:pmrd
          Length = 111

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 3  tggagaagcagggcacgtgc 22
          ||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgc 40




>48841_osa-miR164d:pmrd
          Length = 94

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 3  tggagaagcagggcacgtgc 22
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>46942_ath-miR164c:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 3  tggagaagcagggcacgtgc 22
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30