miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54421_sbi-miR166f:pmrd
Length = 139
Score = 276 bits (139), Expect = 4e-75
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 1 ccttggtcatgggggtttgtggggaatgttggctggctcgaggcatccgcgtcctggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttggtcatgggggtttgtggggaatgttggctggctcgaggcatccgcgtcctggctt 60
Query: 61 gcagatcgttttgcctgctaccggaaagatcgagaggcgtcggaccaggcttcattcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcagatcgttttgcctgctaccggaaagatcgagaggcgtcggaccaggcttcattcctc 120
Query: 121 gcaaaccggtgcatccatg 139
|||||||||||||||||||
Sbjct: 121 gcaaaccggtgcatccatg 139
>54969_zma-miR166m:pmrd
Length = 156
Score = 141 bits (71), Expect = 2e-34
Identities = 133/153 (86%), Gaps = 18/153 (11%)
Strand = Plus / Plus
Query: 1 ccttggtcatgggggtttgtggggaatgttggctggctcgaggcatccgcgtcctggct- 59
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccttggtc-tgggggtttgtggggaatgttggctggctcgaggcatccgcgtcctggctc 60
Query: 60 ----------tgcagatc--gttttgcctgcta----ccggaaagatcgagaggcgtcgg 103
||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 61 gcagtcgcagcgcagatcgtgttttgcctgctaccggccggacagatcgagaggcgtcgg 120
Query: 104 accaggcttcattcctcgcaaaccggtgcatcc 136
|||||||||||||||||||||||||||||||||
Sbjct: 121 accaggcttcattcctcgcaaaccggtgcatcc 153
>54794_vvi-miR166f:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 17 ttgtggggaatgttggctggctcgaggc 44
||||||||||||||||||||||||||||
Sbjct: 6 ttgtggggaatgttggctggctcgaggc 33
>48851_osa-miR166h:pmrd
Length = 119
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 17 ttgtggggaatgttggctggctcgaggcatcc 48
||||||||||||||||||||||||||| ||||
Sbjct: 7 ttgtggggaatgttggctggctcgaggtatcc 38
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 97 gcgtcggaccaggcttcattcctcgcaa 124
||||||||||||||||||||||||||||
Sbjct: 86 gcgtcggaccaggcttcattcctcgcaa 113
>54790_vvi-miR166b:pmrd
Length = 99
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgaggcat 46
|||| ||||||||||||||||||||||||||
Sbjct: 5 tttgaggggaatgttggctggctcgaggcat 35
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcctcgcaaa 125
|||||||||||||||||||||| ||||
Sbjct: 67 gtcggaccaggcttcattcctctcaaa 93
>48712_mtr-miR166b:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ggggaatgttggctggctcgaggc 44
||||||||||||||||||||||||
Sbjct: 1 ggggaatgttggctggctcgaggc 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 95 aggcgtcggaccaggcttcattcc 118
|||| |||||||||||||||||||
Sbjct: 71 aggcttcggaccaggcttcattcc 94
>48551_gma-miR166o:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ggggaatgttggctggctcgaggc 44
||||||||||||||||||||||||
Sbjct: 1 ggggaatgttggctggctcgaggc 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 95 aggcgtcggaccaggcttcattcc 118
|||| |||||||||||||||||||
Sbjct: 61 aggcttcggaccaggcttcattcc 84
>54968_zma-miR166l:pmrd
Length = 137
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcctc 120
|||||||||||||||||||||
Sbjct: 98 tcggaccaggcttcattcctc 118
>54793_vvi-miR166e:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 133 cgtcggaccaggcttcattcc 153
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgagg 43
|||| ||||||||||| |||||||||||
Sbjct: 5 tttgaggggaatgttgtctggctcgagg 32
>54791_vvi-miR166c:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 127 cgtcggaccaggcttcattcc 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgagg 43
|||| ||||||||||| |||||||||||
Sbjct: 5 tttgaggggaatgttgtctggctcgagg 32
>54426_sbi-miR166k:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcctc 120
|||||||||||||||||||||
Sbjct: 83 tcggaccaggcttcattcctc 103
>52289_ptc-miRf10467-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 27 cgtcggaccaggcttcattcc 7
>51630_ptc-miR166f:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ggggaatgttggctggctcga 41
|||||||||||||||||||||
Sbjct: 11 ggggaatgttggctggctcga 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 95 aggcgtcggaccaggcttcattcc 118
|||| |||||||||||||||||||
Sbjct: 71 aggcttcggaccaggcttcattcc 94
>51628_ptc-miR166d:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ggggaatgttggctggctcga 41
|||||||||||||||||||||
Sbjct: 11 ggggaatgttggctggctcga 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 95 aggcgtcggaccaggcttcattcc 118
|||| |||||||||||||||||||
Sbjct: 71 aggcttcggaccaggcttcattcc 94
>51627_ptc-miR166c:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 103 cgtcggaccaggcttcattcc 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgagg 43
|||| ||||||||||| |||||||||||
Sbjct: 6 tttgaggggaatgttgtctggctcgagg 33
>51558_pta-miR166a:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 64 cgtcggaccaggcttcattcc 84
>48850_osa-miR166g:pmrd
Length = 145
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcctc 120
|||||||||||||||||||||
Sbjct: 115 tcggaccaggcttcattcctc 135
>48713_mtr-miR166c:pmrd
Length = 171
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcctc 120
|||||||||||||||||||||
Sbjct: 151 tcggaccaggcttcattcctc 171
>48672_ini-miR166:pmrd
Length = 169
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcctc 120
|||||||||||||||||||||
Sbjct: 149 tcggaccaggcttcattcctc 169
>48495_ghr-miR166b:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 128 cgtcggaccaggcttcattcc 148
>48494_ghr-miR166a:pmrd
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 125 cgtcggaccaggcttcattcc 145
>48427_cpt-miR166:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 127 cgtcggaccaggcttcattcc 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgagg 43
|||| ||||||||||| |||||||||||
Sbjct: 5 tttgaggggaatgttgtctggctcgagg 32
>48342_bna-miR166a:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 109 cgtcggaccaggcttcattcc 129
>48299_ath-miRf11199-akr:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 113 cgtcggaccaggcttcattcc 133
>46949_ath-miR166e:pmrd
Length = 143
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 117 cgtcggaccaggcttcattcc 137
>46946_ath-miR166b:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 94 cgtcggaccaggcttcattcc 114
>46870_aqc-miR166e:pmrd
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 cgtcggaccaggcttcattcc 118
|||||||||||||||||||||
Sbjct: 119 cgtcggaccaggcttcattcc 139
>46869_aqc-miR166d:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcctc 120
|||||||||||||||||||||
Sbjct: 105 tcggaccaggcttcattcctc 125
>46866_aqc-miR166a:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcctc 120
|||||||||||||||||||||
Sbjct: 86 tcggaccaggcttcattcctc 106
>54789_vvi-miR166a:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcct 119
||||||||||||||||||||
Sbjct: 100 tcggaccaggcttcattcct 119
>54578_smo-miR166c:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 106 gtcggaccaggcttcattcc 125
>54544_sly-miR166b:pmrd
Length = 201
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 153 gtcggaccaggcttcattcc 172
>52336_ptc-miRf10514-akr:pmrd
Length = 144
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcct 119
||||||||||||||||||||
Sbjct: 119 tcggaccaggcttcattcct 138
>52014_ptc-miRf10192-akr:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 107 gtcggaccaggcttcattcc 126
>51641_ptc-miR166q:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcct 119
||||||||||||||||||||
Sbjct: 123 tcggaccaggcttcattcct 142
>51639_ptc-miR166o:pmrd
Length = 324
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcct 119
||||||||||||||||||||
Sbjct: 296 tcggaccaggcttcattcct 315
>51638_ptc-miR166n:pmrd
Length = 331
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcct 119
||||||||||||||||||||
Sbjct: 303 tcggaccaggcttcattcct 322
>51635_ptc-miR166k:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgagg 43
|||| ||||||||||| |||||||||||
Sbjct: 6 tttgaggggaatgttgtctggctcgagg 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 113 gtcggaccaggcttcattcc 132
>51634_ptc-miR166j:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgagg 43
|||| ||||||||||| |||||||||||
Sbjct: 6 tttgaggggaatgttgtctggctcgagg 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 113 gtcggaccaggcttcattcc 132
>51625_ptc-miR166a:pmrd
Length = 164
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgagg 43
|||| ||||||||||| |||||||||||
Sbjct: 6 tttgaggggaatgttgtctggctcgagg 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 134 gtcggaccaggcttcattcc 153
>51559_pta-miR166b:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 89 gtcggaccaggcttcattcc 108
>51336_pga-miR166:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcct 119
||||||||||||||||||||
Sbjct: 32 tcggaccaggcttcattcct 51
>48847_osa-miR166d:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgagg 43
|||| ||||||||||| |||||||||||
Sbjct: 14 tttgaggggaatgttgtctggctcgagg 41
>48789_nsy-miR166:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 161 gtcggaccaggcttcattcc 180
>48548_gma-miR166a:pmrd
Length = 146
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgagg 43
|||| ||||||||||| |||||||||||
Sbjct: 16 tttgaggggaatgttgtctggctcgagg 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 106 gtcggaccaggcttcattcc 125
>48344_bna-miR166c:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 92 gtcggaccaggcttcattcc 111
>48343_bna-miR166b:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 90 gtcggaccaggcttcattcc 109
>46950_ath-miR166f:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcc 118
||||||||||||||||||||
Sbjct: 77 gtcggaccaggcttcattcc 96
>46868_aqc-miR166c:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 tcggaccaggcttcattcct 119
||||||||||||||||||||
Sbjct: 89 tcggaccaggcttcattcct 108
