miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54436_sbi-miR168:pmrd
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 gccgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacg 60
Query: 61 ggacagatcccgccttgcaccaagtgaatccgagccggagcagccg 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggacagatcccgccttgcaccaagtgaatccgagccggagcagccg 106
>54636_sof-miR168a:pmrd
Length = 104
Score = 131 bits (66), Expect = 1e-31
Identities = 96/105 (91%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 1 gccgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacg 60
|||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||
Sbjct: 1 gccgccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacg 58
Query: 61 ggacagatcccgccttgcaccaagtgaatccgagccggagcagcc 105
|||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 59 ggacggatcccgccttgcaccaagtgaatcggagccggcgcagcc 103
>54999_zma-miR168a:pmrd
Length = 104
Score = 119 bits (60), Expect = 4e-28
Identities = 87/95 (91%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 4 gccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacggga 63
||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||
Sbjct: 4 gccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacggga 61
Query: 64 cagatcccgccttgcaccaagtgaatccgagccgg 98
| ||||||||||||||||||||||||| |||||||
Sbjct: 62 cggatcccgccttgcaccaagtgaatcggagccgg 96
>55000_zma-miR168b:pmrd
Length = 104
Score = 111 bits (56), Expect = 1e-25
Identities = 92/103 (89%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 2 ccgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgg 61
||||||||||| ||||||||||||||||||||||||||||| |||||| | | |||||
Sbjct: 2 ccgccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgg 59
Query: 62 gacagatcccgccttgcaccaagtgaatccgagccggagcagc 104
||| |||||||||||||| |||||||||| ||||||| |||||
Sbjct: 60 gacggatcccgccttgcatcaagtgaatcggagccggcgcagc 102
>54637_sof-miR168b:pmrd
Length = 103
Score = 83.8 bits (42), Expect = 2e-17
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 17 gggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgcctt 76
|||||||||||| ||||||||||||| |||||| || |||||||| |||||||||||
Sbjct: 17 gggctcgcttgg-gcagatcgggacccgccgcccggcc--gacgggacggatcccgcctt 73
Query: 77 gcaccaagtgaatccgagccggagcagcc 105
|||||||||||||| ||||||| ||||||
Sbjct: 74 gcaccaagtgaatcggagccggcgcagcc 102
>48873_osa-miR168a:pmrd
Length = 87
Score = 79.8 bits (40), Expect = 4e-16
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 11 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 69
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
Query: 70 ccgccttgcaccaagtgaatccgagccg 97
||||||||||||||||||||| ||||||
Sbjct: 60 ccgccttgcaccaagtgaatcggagccg 87
>48872_osa-miR168a:pmrd
Length = 87
Score = 79.8 bits (40), Expect = 4e-16
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 11 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 69
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
Query: 70 ccgccttgcaccaagtgaatccgagccg 97
||||||||||||||||||||| ||||||
Sbjct: 60 ccgccttgcaccaagtgaatcggagccg 87
>48871_osa-miR168a:pmrd
Length = 87
Score = 79.8 bits (40), Expect = 4e-16
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 11 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 69
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
Query: 70 ccgccttgcaccaagtgaatccgagccg 97
||||||||||||||||||||| ||||||
Sbjct: 60 ccgccttgcaccaagtgaatcggagccg 87
>55002_zma-miR168m:pmrd
Length = 65
Score = 71.9 bits (36), Expect = 9e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 80
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
Query: 81 caagtga 87
|||||||
Sbjct: 59 caagtga 65
>54655_ssp-miR168:pmrd
Length = 65
Score = 71.9 bits (36), Expect = 9e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 80
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
Query: 81 caagtga 87
|||||||
Sbjct: 59 caagtga 65
>48661_hvv-miR168:pmrd
Length = 66
Score = 61.9 bits (31), Expect = 9e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 80
|||||||||||||||||||||| ||||| || | |||||| | |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggaccctccgccc-gccccgacgggccggatcccgccttgcac 59
Query: 81 caagtga 87
|||||||
Sbjct: 60 caagtga 66
>48875_osa-miR168m:pmrd
Length = 67
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacctgccgccg 50
|||||||||||||||||||||| |||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgccg 30
>55001_zma-miR168c:pmrd
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccg-ccttgca 79
||||||| |||||||||||||| |||||| || | |||||||| ||||||| |||||||
Sbjct: 1 tcgcttgttgcagatcgggacccgccgccccgcgc-gacgggacggatcccgcccttgca 59
Query: 80 ccaagtga 87
|||||||
Sbjct: 60 tcaagtga 67
>48349_bna-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 66 gatcccgccttgcaccaagtgaatccgag 94
|||||||||||| | ||||||||||||||
Sbjct: 95 gatcccgccttgtatcaagtgaatccgag 123
