miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51664_ptc-miR169g:pmrd
          Length = 106

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 2  agccaaggatgacttgccggcatttc 27
          ||||||||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggcatttc 37




>51661_ptc-miR169d:pmrd
          Length = 111

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 2  agccaaggatgacttgccggcatttc 27
          ||||||||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggcatttc 37




>55019_zma-miR169q:pmrd
          Length = 69

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  tagccaaggatgacttgccggcatt 25
          |||||||||||||||||||||||||
Sbjct: 5  tagccaaggatgacttgccggcatt 29



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 81  ggccggccggcaagtcatctgtggctacg 109
           |||| |||||||||||||||| |||||||
Sbjct: 39  ggcccgccggcaagtcatctggggctacg 67




>54819_vvi-miR169q:pmrd
          Length = 97

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 2  agccaaggatgacttgccggcattt 26
          |||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcattt 37




>48640_gso-miR169g*:pmrd
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 2  agccaaggatgacttgccggcatt 25
          ||||||||||||||||||||||||
Sbjct: 1  agccaaggatgacttgccggcatt 24




>48639_gso-miR169a:pmrd
          Length = 103

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 2  agccaaggatgacttgccggcatt 25
          ||||||||||||||||||||||||
Sbjct: 2  agccaaggatgacttgccggcatt 25




>48564_gma-miR169p:pmrd
          Length = 111

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 2  agccaaggatgacttgccggcatt 25
          ||||||||||||||||||||||||
Sbjct: 2  agccaaggatgacttgccggcatt 25




>54638_sof-miR169:pmrd
          Length = 143

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tagccaaggatgacttgccggca 23
          |||||||||||||||||||||||
Sbjct: 1  tagccaaggatgacttgccggca 23




>55018_zma-miR169p:pmrd
          Length = 131

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tagccaaggatgacttgccggc 22
          ||||||||||||||||||||||
Sbjct: 3  tagccaaggatgacttgccggc 24




>55016_zma-miR169n:pmrd
          Length = 191

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tagccaaggatgacttgccggc 22
          ||||||||||||||||||||||
Sbjct: 2  tagccaaggatgacttgccggc 23




>54825_vvi-miR169w:pmrd
          Length = 143

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccggca 35




>54821_vvi-miR169s:pmrd
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccggca 35




>54818_vvi-miR169p:pmrd
          Length = 102

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>54816_vvi-miR169n:pmrd
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>54815_vvi-miR169m:pmrd
          Length = 102

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>54446_sbi-miR169j:pmrd
          Length = 123

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tagccaaggatgacttgccggc 22
          ||||||||||||||||||||||
Sbjct: 3  tagccaaggatgacttgccggc 24




>54091_ptc-miRf12269-akr:pmrd
          Length = 122

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 2   agccaaggatgacttgccggca 23
           ||||||||||||||||||||||
Sbjct: 110 agccaaggatgacttgccggca 89




>52526_ptc-miRf10704-akr:pmrd
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 2   agccaaggatgacttgccggca 23
           ||||||||||||||||||||||
Sbjct: 109 agccaaggatgacttgccggca 88




>51676_ptc-miR169s:pmrd
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34




>51665_ptc-miR169h:pmrd
          Length = 118

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggca 33




>51662_ptc-miR169e:pmrd
          Length = 166

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggca 33




>51339_phy-miR169:pmrd
          Length = 146

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  agccaaggatgacttgccggca 23
          ||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggca 37




>48880_osa-miR169e:pmrd
          Length = 132

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tagccaaggatgacttgccggc 22
          ||||||||||||||||||||||
Sbjct: 11 tagccaaggatgacttgccggc 32




>55020_zma-miR169r:pmrd
          Length = 95

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  agccaaggatgacttgccggc 22
          |||||||||||||||||||||
Sbjct: 2  agccaaggatgacttgccggc 22




>55017_zma-miR169o:pmrd
          Length = 145

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   tagccaaggatgacttgccgg 21
           |||||||||||||||||||||
Sbjct: 124 tagccaaggatgacttgccgg 144




>55005_zma-miR169c:pmrd
          Length = 134

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  agccaaggatgacttgccggc 22
          |||||||||||||||||||||
Sbjct: 22 agccaaggatgacttgccggc 42




>54803_vvi-miR169a:pmrd
          Length = 124

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  agccaaggatgacttgccggcattt 26
          |||||||||||||||||||| ||||
Sbjct: 14 agccaaggatgacttgccggaattt 38




>54447_sbi-miR169k:pmrd
          Length = 97

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  agccaaggatgacttgccggc 22
          |||||||||||||||||||||
Sbjct: 2  agccaaggatgacttgccggc 22




>50631_osa-miRf11416-akr:pmrd
          Length = 141

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 2   agccaaggatgacttgccggc 22
           |||||||||||||||||||||
Sbjct: 122 agccaaggatgacttgccggc 102




>50630_osa-miRf11415-akr:pmrd
          Length = 147

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  agccaaggatgacttgccggc 22
          |||||||||||||||||||||
Sbjct: 23 agccaaggatgacttgccggc 43




>49845_osa-miRf10630-akr:pmrd
          Length = 114

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 2   agccaaggatgacttgccggc 22
           |||||||||||||||||||||
Sbjct: 102 agccaaggatgacttgccggc 82




>48891_osa-miR169p:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 2   agccaaggatgacttgccggc 22
           |||||||||||||||||||||
Sbjct: 115 agccaaggatgacttgccggc 95




>48878_osa-miR169c:pmrd
          Length = 112

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  agccaaggatgacttgccggc 22
          |||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggc 32




>48561_gma-miR169a:pmrd
          Length = 121

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  agccaaggatgacttgccggc 22
          |||||||||||||||||||||
Sbjct: 22 agccaaggatgacttgccggc 42




>48310_bdi-miR169b:pmrd
          Length = 106

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tagccaaggatgacttgccgg 21
          |||||||||||||||||||||
Sbjct: 19 tagccaaggatgacttgccgg 39




>54813_vvi-miR169k:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccgg 33




>54812_vvi-miR169j:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccgg 33




>54805_vvi-miR169c:pmrd
          Length = 90

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccgg 33




>54547_sly-miR169a:pmrd
          Length = 149

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 42 agccaaggatgacttgccgg 61




>54438_sbi-miR169b:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 2  agccaaggatgacttgccgg 21




>51663_ptc-miR169f:pmrd
          Length = 239

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgg 31




>48877_osa-miR169b:pmrd
          Length = 128

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgg 31




>48563_gma-miR169c:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 2  agccaaggatgacttgccggcatt 25
          ||||||||||||||||||| ||||
Sbjct: 12 agccaaggatgacttgccgacatt 35




>48239_ath-miRf11139-akr:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 22 agccaaggatgacttgccgg 41




>47961_ath-miRf10861-akr:pmrd
          Length = 109

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 6  agccaaggatgacttgccgg 25




>47674_ath-miRf10574-akr:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   agccaaggatgacttgccgg 21
           ||||||||||||||||||||
Sbjct: 111 agccaaggatgacttgccgg 92




>46967_ath-miR169g:pmrd
          Length = 379

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   agccaaggatgacttgccgg 21
           ||||||||||||||||||||
Sbjct: 146 agccaaggatgacttgccgg 165




>46966_ath-miR169g:pmrd
          Length = 379

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   agccaaggatgacttgccgg 21
           ||||||||||||||||||||
Sbjct: 146 agccaaggatgacttgccgg 165




>46965_ath-miR169f:pmrd
          Length = 167

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 34 agccaaggatgacttgccgg 53




>46962_ath-miR169c:pmrd
          Length = 411

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   agccaaggatgacttgccgg 21
           ||||||||||||||||||||
Sbjct: 114 agccaaggatgacttgccgg 133




>46961_ath-miR169b:pmrd
          Length = 181

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 44 agccaaggatgacttgccgg 63




>46875_aqc-miR169c:pmrd
          Length = 111

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agccaaggatgacttgccgg 21
          ||||||||||||||||||||
Sbjct: 6  agccaaggatgacttgccgg 25




>46859_ama-miR169:pmrd
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tagccaaggatgacttgccg 20
          ||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgccg 33