miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54453_sbi-miR171b:pmrd
Length = 132
Score = 262 bits (132), Expect = 6e-71
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1 atggccgccgcgcgcgacggggtattggcgcggttcaattcgagagctcgagccctagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggccgccgcgcgcgacggggtattggcgcggttcaattcgagagctcgagccctagac 60
Query: 61 tagacgccagggagagagggggctctgctctctgattgagccgtgccaatatcacgtccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagacgccagggagagagggggctctgctctctgattgagccgtgccaatatcacgtccc 120
Query: 121 gcttgaatggct 132
||||||||||||
Sbjct: 121 gcttgaatggct 132
>55037_zma-miR171j:pmrd
Length = 129
Score = 123 bits (62), Expect = 3e-29
Identities = 96/105 (91%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 16 gacggggtattggcgcggttcaattcgagagctcgagccctagactagacgccagggaga 75
|||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct: 16 gacggggtattgacgcggttcaattcgagagctcgagccctag--cagaggccaggg-gg 72
Query: 76 gagggggctctgctctctgattgagccgtgccaatatcacgtccc 120
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ggtggggctctgctctctgattgagccgtgccaatatcacgtccc 117
>54462_sbi-miR171k:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 79 ggggctctgctctctgattgagccgtgccaatatcacgtc 118
||||||| |||| ||||||||||||||||||||||||||
Sbjct: 48 ggggctccactctttgattgagccgtgccaatatcacgtc 87
>48897_osa-miR171c:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 79 ggggctctgctctctgattgagccgtgccaatatcacgtc 118
||||||| |||| ||||||||||||||||||||||||||
Sbjct: 55 ggggctccactctttgattgagccgtgccaatatcacgtc 94
>54831_vvi-miR171d:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgtcc 119
|||||||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcacgtcc 93
>55029_zma-miR171b:pmrd
Length = 85
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 79 ggggctctgctctctgattgagccgtgccaatatcacg 116
||||||| |||| ||||||||||||||||||||||||
Sbjct: 48 ggggctccactctttgattgagccgtgccaatatcacg 85
>48896_osa-miR171b:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgtc 118
||||||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcacgtc 95
>55030_zma-miR171c:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 79 ggggctctgctctctgattgagccgtgccaatatcacgtcc 119
||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 65 ggggctccactctttgactgagccgtgccaatatcacgtcc 105
>54830_vvi-miR171c:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcacgt 94
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatcacgt 87
>51691_ptc-miR171h:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatcac 115
|||||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatcac 93
>51690_ptc-miR171g:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatcac 115
|||||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatcac 93
>51689_ptc-miR171f:pmrd
Length = 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 tctctgattgagccgtgccaatatc 113
|||||||||||||||||||||||||
Sbjct: 97 tctctgattgagccgtgccaatatc 121
>51685_ptc-miR171b:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcacgt 95
>51684_ptc-miR171a:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
|||||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatcacgt 96
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatcac 115
|||||||||||||||||||||||||
Sbjct: 93 tctgattgagccgtgccaatatcac 117
>48900_osa-miR171f:pmrd
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatcac 115
|||||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatcac 119
>46877_aqc-miR171b:pmrd
Length = 77
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatcac 115
|||||||||||||||||||||||||
Sbjct: 53 tctgattgagccgtgccaatatcac 77
>54836_vvi-miR171i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatca 114
||||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatca 90
>54828_vvi-miR171a:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatca 114
||||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatca 89
>54680_tae-miR170b:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 ctctgattgagccgtgccaatatc 113
||||||||||||||||||||||||
Sbjct: 71 ctctgattgagccgtgccaatatc 94
>48403_bra-miR171a:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacg 116
||||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatcacg 85
>48386_bol-miR171a:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacg 116
||||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcacg 91
>48367_bna-miR171e:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacg 116
||||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcacg 90
>48366_bna-miR171d:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacg 116
||||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcacg 91
>48312_bdi-miR171c:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 ctctctgattgagccgtgccaatatcac 115
|||| |||||||||||||||||||||||
Sbjct: 59 ctctttgattgagccgtgccaatatcac 86
>46979_ath-miR171c:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacg 116
||||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatcacg 110
>55036_zma-miR171i:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcac 115
|||||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatcac 87
>55033_zma-miR171f:pmrd
Length = 155
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcac 115
|||||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatcac 137
>55032_zma-miR171e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>55031_zma-miR171d:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 80 tctgattgagccgtgccaatatc 102
>54832_vvi-miR171e:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tctctgattgagccgtgccaatatcac 115
||||||||||||||| |||||||||||
Sbjct: 66 tctctgattgagccgcgccaatatcac 92
>54552_sly-miR171b:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 attgagccgtgccaatatcacgt 117
|||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacgt 86
>54460_sbi-miR171i:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>54455_sbi-miR171d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 113 tctgattgagccgtgccaatatc 135
>54452_sbi-miR171a:pmrd
Length = 161
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcac 115
|||||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatcac 144
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 58 tctgattgagccgtgccaatatc 80
>51688_ptc-miR171e:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>48905_osa-miR171n:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48899_osa-miR171e:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>48898_osa-miR171d:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>48894_osa-miR170b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgtgccaatatc 113
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>48406_bra-miR171d:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gattgagccgtgccaatatcacg 116
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>48405_bra-miR171c:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gattgagccgtgccaatatcacg 116
|||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcacg 87
>48404_bra-miR171b:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gattgagccgtgccaatatcacg 116
|||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcacg 94
>48365_bna-miR171c:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gattgagccgtgccaatatcacg 116
|||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcacg 87
>48364_bna-miR171b:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gattgagccgtgccaatatcacg 116
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>48363_bna-miR171a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gattgagccgtgccaatatcacg 116
|||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcacg 94
>46978_ath-miR171b:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gattgagccgtgccaatatcacg 116
|||||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatcacg 98
>46881_aqc-miR171f:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 attgagccgtgccaatatcacgt 117
|||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacgt 86
>54579_smo-miR171a:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 gattgagccgtgccaatatcac 115
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
>51346_ppe-miR171:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatca 114
||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88
>51345_ppe-miR170:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatca 114
||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88
>48567_gma-miR171a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 attgagccgtgccaatatcacg 116
||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacg 91
>55039_zma-miR171m:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatc 113
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>55024_zma-miR170m:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatc 113
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>54553_sly-miR171c:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 93 tgattgagccgtgccaatatcacgt 117
||||||||||| |||||||||||||
Sbjct: 78 tgattgagccgcgccaatatcacgt 102
