miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54471_sbi-miR394a:pmrd
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ctttacatactgagagttccttggcattctgtccacctccttgcccatcgtcagatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttacatactgagagttccttggcattctgtccacctccttgcccatcgtcagatatat 60
Query: 61 gtgttgcttttggaggtggacatactgccaatggagctgtgtaggcctct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgttgcttttggaggtggacatactgccaatggagctgtgtaggcctct 110
>54472_sbi-miR394b:pmrd
Length = 111
Score = 186 bits (94), Expect = 2e-48
Identities = 107/111 (96%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 1 ctttacatactgagagttccttggcattctgtccacctccttg-cccatcgtcagatata 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ctttacatactgagagttccttggcattctgtccacctccttggcccatcgtcagatata 60
Query: 60 tgtgttgcttttggaggtggacatactgccaatggagctgtgtaggcctct 110
||||||||||||||||||||| |||||| |||||||||||||||||| |||
Sbjct: 61 tgtgttgcttttggaggtgganatactgncaatggagctgtgtaggcntct 111
>55064_zma-miR394a:pmrd
Length = 126
Score = 75.8 bits (38), Expect = 6e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 68 ttttggaggtggacatactgccaatggagctgtgtaggcctc 109
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 84 ttttggaggtgggcatactgccaatggagctgtgtaggcctc 125
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 agagttccttggcattctgtccacctcct 41
|||||||||||||||||||||||||||||
Sbjct: 13 agagttccttggcattctgtccacctcct 41
>55065_zma-miR394b:pmrd
Length = 122
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 tactgagagttccttggcattctgtccacctcc 40
|||||||||||||||||||||||||||||||||
Sbjct: 8 tactgagagttccttggcattctgtccacctcc 40
Score = 65.9 bits (33), Expect = 6e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 69 tttggaggtggacatactgccaatggagctgtgtaggcctc 109
||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 81 tttggaggtgggcatactgccaatggagctgcgtaggcctc 121
>48920_osa-miR394:pmrd
Length = 110
Score = 65.9 bits (33), Expect = 6e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 57 atatgtgttgcttttggaggtggacatactgccaatggagctgtgtagg 105
|||| ||||| | |||||||||| |||||||||||||||||||||||||
Sbjct: 62 atatctgttgatcttggaggtgggcatactgccaatggagctgtgtagg 110
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 8 tactgagagttccttggcattctgtccacctccttg 43
|||||||||||| |||||||||||||||||||||||
Sbjct: 1 tactgagagttctttggcattctgtccacctccttg 36
>47000_ath-miR394a:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcctt 42
||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcctt 35
>54851_vvi-miR394a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctccttgcccatc 49
|||||||||||||||||||| ||| ||||
Sbjct: 11 ttggcattctgtccacctccatgcacatc 39
>51918_ptc-miRf10096-akr:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcct 41
|||||||||||||||||||||
Sbjct: 25 ttggcattctgtccacctcct 45
>47001_ath-miR394b:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcct 41
|||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcct 34
>54853_vvi-miR394c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>54852_vvi-miR394b:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>48502_ghr-miR394:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 1 ttggcattctgtccacctcc 20
