miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54522_sbi-miR821c:pmrd
          Length = 285

 Score =  440 bits (222), Expect = e-124
 Identities = 264/285 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatgattttagctaaaaaagtcatcaacataaaagttgtagaactggtcaagatctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taaatgattttagctaaaaaagtcatcaacataaaagttgtagaactggtcaagatctct 60

                                                                       
Query: 61  aannnnnnnnnnnnnnnnnnnnncatatgacaaagtaatagtaacattggtcataaattt 120
           ||                     |||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatttttattttagtcattttttcatatgacaaagtaatagtaacattggtcataaattt 120

                                                                       
Query: 121 tacatatctctgatatagtttcataaactatatgagagatatgtaaaatttatgaacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacatatctctgatatagtttcataaactatatgagagatatgtaaaatttatgaacaat 180

                                                                       
Query: 181 gttactattactttgccggatgaataaatgaccagaataaaagttgtagatcttgatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttactattactttgccggatgaataaatgaccagaataaaagttgtagatcttgatgag 240

                                                        
Query: 241 ttgtacaacttgtatattcatgactttatcacctaaaatcattta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgtacaacttgtatattcatgactttatcacctaaaatcattta 285



 Score =  188 bits (95), Expect = 2e-48
 Identities = 170/195 (87%)
 Strand = Plus / Minus

                                                                       
Query: 91  caaagtaatagtaacattggtcataaattttacatatctctgatatagtttcataaacta 150
           ||||||||||||||||||| ||||||||||||||||||||| |||||||||   ||||||
Sbjct: 195 caaagtaatagtaacattgttcataaattttacatatctctcatatagtttatgaaacta 136

                                                                       
Query: 151 tatgagagatatgtaaaatttatgaacaatgttactattactttgccggatgaataaatg 210
           ||| ||||||||||||||||||||| ||||||||||||||||||| |  ||||| |||||
Sbjct: 135 tatcagagatatgtaaaatttatgaccaatgttactattactttgtcatatgaaaaaatg 76

                                                                       
Query: 211 accagaataaaagttgtagatcttgatgagttgtacaacttgtatattcatgactttatc 270
           || | ||||||| ||  |||||||||  |||| |||||||| ||| || |||||||| | 
Sbjct: 75  actaaaataaaaattagagatcttgaccagttctacaacttttatgttgatgactttttt 16

                          
Query: 271 acctaaaatcattta 285
           | |||||||||||||
Sbjct: 15  agctaaaatcattta 1



 Score = 44.1 bits (22), Expect = 6e-05
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 1   taaatgattttagctaaaaaagtcatcaacataaaagttgtagaactggtcaagatct 58
           ||||||||||||| | | |||||||| || ||| |||||||| ||||  |||||||||
Sbjct: 285 taaatgattttaggtgataaagtcatgaatatacaagttgtacaactcatcaagatct 228




>54520_sbi-miR821a:pmrd
          Length = 285

 Score =  369 bits (186), Expect = e-103
 Identities = 255/285 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatgattttagctaaaaaagtcatcaacataaaagttgtagaactggtcaagatctct 60
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 1   taaatgatttcagctaaaaaagtcatcaacataaaagttgtaaaactggtcaagatctcc 60

                                                                       
Query: 61  aannnnnnnnnnnnnnnnnnnnncatatgacaaagtaatagtaacattggtcataaattt 120
           ||                     |||||||||||||||||||||||||| ||||||||||
Sbjct: 61  aatttttattttagtcattttttcatatgacaaagtaatagtaacattgttcataaattt 120

                                                                       
Query: 121 tacatatctctgatatagtttcataaactatatgagagatatgtaaaatttatgaacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacatatctctgatatagtttcataaactatatgagagatatgtaaaatttatgaacaat 180

                                                                       
Query: 181 gttactattactttgccggatgaataaatgaccagaataaaagttgtagatcttgatgag 240
           ||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 181 gttactattactttgtcggatgaataaataaccaaaataaaagttgtagatcttgatgag 240

                                                        
Query: 241 ttgtacaacttgtatattcatgactttatcacctaaaatcattta 285
           ||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 241 ttgtacaacttgtatattcataactttatcaactaaaatcattta 285



 Score =  200 bits (101), Expect = 4e-52
 Identities = 173/197 (87%)
 Strand = Plus / Minus

                                                                       
Query: 89  gacaaagtaatagtaacattggtcataaattttacatatctctgatatagtttcataaac 148
           ||||||||||||||||||||| ||||||||||||||||||||| |||||||||   ||||
Sbjct: 197 gacaaagtaatagtaacattgttcataaattttacatatctctcatatagtttatgaaac 138

                                                                       
Query: 149 tatatgagagatatgtaaaatttatgaacaatgttactattactttgccggatgaataaa 208
           ||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||| |||
Sbjct: 137 tatatcagagatatgtaaaatttatgaacaatgttactattactttgtcatatgaaaaaa 78

                                                                       
Query: 209 tgaccagaataaaagttgtagatcttgatgagttgtacaacttgtatattcatgacttta 268
           |||| | ||||||| ||| |||||||||  |||| |||||||| ||| || |||||||| 
Sbjct: 77  tgactaaaataaaaattggagatcttgaccagttttacaacttttatgttgatgactttt 18

                            
Query: 269 tcacctaaaatcattta 285
           | | || ||||||||||
Sbjct: 17  ttagctgaaatcattta 1




>54524_sbi-miR821e:pmrd
          Length = 269

 Score =  321 bits (162), Expect = 2e-88
 Identities = 192/202 (95%)
 Strand = Plus / Plus

                                                                       
Query: 84  catatgacaaagtaatagtaacattggtcataaattttacatatctctgatatagtttca 143
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  
Sbjct: 68  catatgacaaagtaatagtaacattgttcataaattttacatatctctgatatagtttat 127

                                                                       
Query: 144 taaactatatgagagatatgtaaaatttatgaacaatgttactattactttgccggatga 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 128 gaaactatatgagagatatgtaaaatttatgaacaatgttactattactttgtcagatga 187

                                                                       
Query: 204 ataaatgaccagaataaaagttgtagatcttgatgagttgtacaacttgtatattcatga 263
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 188 ataaatgatcaaaataaaagttgtagatcttgatgagttgtacaacttgtatattcatgg 247

                                 
Query: 264 ctttatcacctaaaatcattta 285
           |||||||| |||||||||||||
Sbjct: 248 ctttatcaactaaaatcattta 269



 Score =  214 bits (108), Expect = 3e-56
 Identities = 162/180 (90%)
 Strand = Plus / Minus

                                                                       
Query: 88  tgacaaagtaatagtaacattggtcataaattttacatatctctgatatagtttcataaa 147
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 182 tgacaaagtaatagtaacattgttcataaattttacatatctctcatatagtttcataaa 123

                                                                       
Query: 148 ctatatgagagatatgtaaaatttatgaacaatgttactattactttgccggatgaataa 207
           |||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||| ||
Sbjct: 122 ctatatcagagatatgtaaaatttatgaacaatgttactattactttgtcatatgaaaaa 63

                                                                       
Query: 208 atgaccagaataaaagttgtagatcttgatgagttgtacaacttgtatattcatgacttt 267
           ||||| | ||||||| | | |||||||||  |||| |||||||| ||| || ||||||||
Sbjct: 62  atgactaaaataaaaatgggagatcttgactagttctacaacttttattttgatgacttt 3




>54523_sbi-miR821d:pmrd
          Length = 264

 Score =  143 bits (72), Expect = 9e-35
 Identities = 147/172 (85%)
 Strand = Plus / Plus

                                                                       
Query: 92  aaagtaatagtaacattggtcataaattttacatatctctgatatagtttcataaactat 151
           ||||| |||| ||||||| |||||||||||||| ||| ||  ||| ||||||||||||||
Sbjct: 76  aaagtgatagcaacattgttcataaattttacaaatccctcgtatggtttcataaactat 135

                                                                       
Query: 152 atgagagatatgtaaaatttatgaacaatgttactattactttgccggatgaataaatga 211
           | |||||||||||||| ||| |||||||| ||||||| |||||  |||||||| ||||  
Sbjct: 136 aagagagatatgtaaattttgtgaacaatattactatcactttctcggatgaacaaatac 195

                                                               
Query: 212 ccagaataaaagttgtagatcttgatgagttgtacaacttgtatattcatga 263
           | | ||||||||||||| || |||||||||| |||||||| ||| |||||||
Sbjct: 196 ctaaaataaaagttgtatatattgatgagttctacaacttttatgttcatga 247



 Score =  111 bits (56), Expect = 3e-25
 Identities = 134/160 (83%)
 Strand = Plus / Minus

                                                                       
Query: 92  aaagtaatagtaacattggtcataaattttacatatctctgatatagtttcataaactat 151
           ||||| ||||||| |||| ||| ||| |||||||||||||  ||||||||   |||| ||
Sbjct: 178 aaagtgatagtaatattgttcacaaaatttacatatctctcttatagtttatgaaaccat 119

                                                                       
Query: 152 atgagagatatgtaaaatttatgaacaatgttactattactttgccggatgaataaatga 211
           | ||| ||| |||||||||||||||||||||| |||| |||||  || ||| ||||||||
Sbjct: 118 acgagggatttgtaaaatttatgaacaatgttgctatcactttatcgaatggataaatga 59

                                                   
Query: 212 ccagaataaaagttgtagatcttgatgagttgtacaactt 251
           ||| |||||||||| ||||| || |||| || ||||||||
Sbjct: 58  ccaaaataaaagttttagatattaatgatttctacaactt 19



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 17  aaaaagtcatcaacataaaagttgtagaact 47
           ||||| |||| ||||||||||||||||||||
Sbjct: 253 aaaaattcatgaacataaaagttgtagaact 223



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 17 aaaaagtcatcaacataaaagttgtagaa 45
          |||||||||||||||  ||||||||||||
Sbjct: 1  aaaaagtcatcaacaacaaagttgtagaa 29




>54521_sbi-miR821b:pmrd
          Length = 273

 Score =  133 bits (67), Expect = 8e-32
 Identities = 157/186 (84%), Gaps = 2/186 (1%)
 Strand = Plus / Minus

                                                                       
Query: 102 taacattggtcataaattttacatatctctgatatagtttcataaactatatga--gaga 159
           |||||||| ||||||||||||||| ||||| |||| |||| |||||||||| ||  ||||
Sbjct: 186 taacattgttcataaattttacatctctctcatatggttttataaactataagagtgaga 127

                                                                       
Query: 160 tatgtaaaatttatgaacaatgttactattactttgccggatgaataaatgaccagaata 219
           ||| |||| ||| |||||||||||||||| | ||    ||||||| ||||||||| ||||
Sbjct: 126 tatataaattttgtgaacaatgttactatcatttcattggatgaacaaatgaccaaaata 67

                                                                       
Query: 220 aaagttgtagatcttgatgagttgtacaacttgtatattcatgactttatcacctaaaat 279
           |||| |||||||||| || |||| |||||||| ||| ||||| ||||| ||| || ||||
Sbjct: 66  aaaggtgtagatcttaatcagttctacaacttttatgttcataactttttcatctgaaat 7

                 
Query: 280 cattta 285
           ||||||
Sbjct: 6   cattta 1



 Score =  105 bits (53), Expect = 2e-23
 Identities = 122/144 (84%), Gaps = 2/144 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  atagtaacattggtcataaattttacatatctc--tgatatagtttcataaactatatga 155
           |||||||||||| ||| ||| |||| |||||||  |  ||||||||   |||| ||||||
Sbjct: 98  atagtaacattgttcacaaaatttatatatctcactcttatagtttataaaaccatatga 157

                                                                       
Query: 156 gagatatgtaaaatttatgaacaatgttactattactttgccggatgaataaatgaccag 215
           |||| |||||||||||||||||||||||| ||| ||| |  |||||||| ||||||||| 
Sbjct: 158 gagagatgtaaaatttatgaacaatgttagtatcactctatcggatgaaaaaatgaccaa 217

                                   
Query: 216 aataaaagttgtagatcttgatga 239
           ||||| |||| |||||||||||||
Sbjct: 218 aataatagttatagatcttgatga 241



 Score = 60.0 bits (30), Expect = 1e-09
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                    
Query: 1  taaatgattttagctaaaaaagtcatcaacataaaagttgtagaactggtcaagatct 58
          |||||||||| || | ||||||| || ||||||||||||||||||||| | |||||||
Sbjct: 1  taaatgatttcagatgaaaaagttatgaacataaaagttgtagaactgattaagatct 58




>49089_osa-miR821a:pmrd
          Length = 274

 Score =  105 bits (53), Expect = 2e-23
 Identities = 116/137 (84%)
 Strand = Plus / Minus

                                                                       
Query: 115 aaattttacatatctctgatatagtttcataaactatatgagagatatgtaaaatttatg 174
           ||||||||||||| | || ||||||||   |||| | || |||||||||| || | | ||
Sbjct: 166 aaattttacatatatgtgttatagtttataaaaccagataagagatatgtcaattctgtg 107

                                                                       
Query: 175 aacaatgttactattactttgccggatgaataaatgaccagaataaaagttgtagatctt 234
           |||||||||||||| |||||| || ||||| ||||||||| |||||||||| ||||||||
Sbjct: 106 aacaatgttactatcactttgtcgtatgaagaaatgaccaaaataaaagttttagatctt 47

                            
Query: 235 gatgagttgtacaactt 251
           |||||||| | ||||||
Sbjct: 46  gatgagttattcaactt 30



 Score = 71.9 bits (36), Expect = 3e-13
 Identities = 136/168 (80%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                       
Query: 84  catatgacaaagtaatagtaacattggtcataaattttacatatctctgatatagtttca 143
           |||| |||||||| |||||||||||| ||| | | || |||||||||| || | |||| |
Sbjct: 79  catacgacaaagtgatagtaacattgttcacagaattgacatatctcttatctggtttta 138

                                                                       
Query: 144 taaactatatgagagatatgtaaaatttatgaacaatgttactattactttgccggatga 203
           |||||||||  | | ||||||||||||| |||| ||| ||||||  | || | | |||||
Sbjct: 139 taaactataacacatatatgtaaaatttgtgaataatattactaacatttcgtcagatga 198

                                                           
Query: 204 ataaatgaccagaataaaagttgtagatcttgatgagttgtacaactt 251
           | |||| |  | |||||||||| |||||||||||||||| | ||||||
Sbjct: 199 agaaat-aaaaaaataaaagttatagatcttgatgagttattcaactt 245



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                         
Query: 12 agctaaaaaagtcatcaacataaaagttgtagaactggtcaagatct 58
          |||| ||||||||||||||| |||||||| | ||||  |||||||||
Sbjct: 7  agctgaaaaagtcatcaacaaaaaagttgaataactcatcaagatct 53




>49091_osa-miR821c:pmrd
          Length = 266

 Score = 81.8 bits (41), Expect = 3e-16
 Identities = 113/137 (82%)
 Strand = Plus / Minus

                                                                       
Query: 115 aaattttacatatctctgatatagtttcataaactatatgagagatatgtaaaatttatg 174
           ||||||||||||| | || ||||||||   |||| | || |||| ||||| || ||| ||
Sbjct: 162 aaattttacatatatgtgttatagtttataaaaccagataagagttatgtcaattttgtg 103

                                                                       
Query: 175 aacaatgttactattactttgccggatgaataaatgaccagaataaaagttgtagatctt 234
           || ||||||||||| |||||| || ||||| |||| |||| |||||||||| ||||| ||
Sbjct: 102 aataatgttactatcactttgtcgtatgaagaaataaccaaaataaaagttttagatgtt 43

                            
Query: 235 gatgagttgtacaactt 251
           |||||||| | ||||||
Sbjct: 42  gatgagttattcaactt 26



 Score = 63.9 bits (32), Expect = 6e-11
 Identities = 135/168 (80%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                       
Query: 84  catatgacaaagtaatagtaacattggtcataaattttacatatctctgatatagtttca 143
           |||| |||||||| |||||||||||  ||| ||| || ||||| |||| || | |||| |
Sbjct: 75  catacgacaaagtgatagtaacattattcacaaaattgacataactcttatctggtttta 134

                                                                       
Query: 144 taaactatatgagagatatgtaaaatttatgaacaatgttactattactttgccggatga 203
           |||||||||  | | ||||||||||||| |||| ||| || |||  | |||| | |||||
Sbjct: 135 taaactataacacatatatgtaaaatttgtgaataat-tttctaacattttgtcagatga 193

                                                           
Query: 204 ataaatgaccagaataaaagttgtagatcttgatgagttgtacaactt 251
           | |||  || | |||||||||| |||||||||||||||| | ||||||
Sbjct: 194 agaaacaacaaaaataaaagttttagatcttgatgagttattcaactt 241



 Score = 40.1 bits (20), Expect = 0.001
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 17 aaaaagtcatcaacataaaagttg 40
          ||||||||||||||| ||||||||
Sbjct: 8  aaaaagtcatcaacaaaaaagttg 31




>49090_osa-miR821b:pmrd
          Length = 287

 Score = 67.9 bits (34), Expect = 4e-12
 Identities = 160/202 (79%)
 Strand = Plus / Minus

                                                                       
Query: 84  catatgacaaagtaatagtaacattggtcataaattttacatatctctgatatagtttca 143
           |||| |||||||| || ||||||||  | ||||| ||  ||||||||| || | |||| |
Sbjct: 203 catacgacaaagtgatggtaacattatttataaaattgtcatatctcttatctggtttta 144

                                                                       
Query: 144 taaactatatgagagatatgtaaaatttatgaacaatgttactattactttgccggatga 203
           |||||| ||  | | ||||||||||||| |||| ||| ||||||  | || | |||||||
Sbjct: 143 taaactttaacacatatatgtaaaatttgtgaataatattactaacatttcgtcggatga 84

                                                                       
Query: 204 ataaatgaccagaataaaagttgtagatcttgatgagttgtacaacttgtatattcatga 263
           | |||| || | |||||||||| ||||||||||| |||| | |||||| | | || ||||
Sbjct: 83  agaaataacaaaaataaaagttttagatcttgataagttattcaacttttttgttgatga 24

                                 
Query: 264 ctttatcacctaaaatcattta 285
           |||| |||  | ||||||||||
Sbjct: 23  ctttttcaattgaaatcattta 2



 Score = 65.9 bits (33), Expect = 2e-11
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                       
Query: 115 aaattttacatatctctgatatagtttcataaactatatgagagatatgtaaaatttatg 174
           ||||||||||||| | || || |||||   |||| | || |||||||||  || ||||| 
Sbjct: 116 aaattttacatatatgtgttaaagtttataaaaccagataagagatatgacaattttata 175

                                                                       
Query: 175 aacaatgttactattactttgccggatgaataaatgaccagaataaaagttgtagatctt 234
           || |||||||| || |||||| || ||||| |||| |||| |||||||||| ||||||||
Sbjct: 176 aataatgttaccatcactttgtcgtatgaagaaataaccacaataaaagttttagatctt 235

                            
Query: 235 gatgagttgtacaactt 251
           || ||||| | ||||||
Sbjct: 236 gaagagttattcaactt 252



 Score = 44.1 bits (22), Expect = 6e-05
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                    
Query: 17 aaaaagtcatcaacataaaagttgtagaactggtcaagatct 58
          ||||||||||||||| |||||||| | ||||  |||||||||
Sbjct: 18 aaaaagtcatcaacaaaaaagttgaataacttatcaagatct 59