miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54689_tae-miR399:pmrd
Length = 126
Score = 250 bits (126), Expect = 2e-67
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 tcgtgtgtgaatcacagggcgcttctcccttggcacggtggcatgcatgtacatatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgtgtgtgaatcacagggcgcttctcccttggcacggtggcatgcatgtacatatgatg 60
Query: 61 gtggtagcctggtgagcgtgcggtgcagcttgctagcaagccgtgcgtgccaaaggagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtggtagcctggtgagcgtgcggtgcagcttgctagcaagccgtgcgtgccaaaggagaa 120
Query: 121 ttgccc 126
||||||
Sbjct: 121 ttgccc 126
>48966_osa-miR399c:pmrd
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 93 ctagcaagccgtgcgtgccaaaggagaattgccc 126
||||| |||| |||||||||||||||||||||||
Sbjct: 65 ctagctagccatgcgtgccaaaggagaattgccc 98
>55101_zma-miR399k:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 tgcgtgccaaaggagaattgccc 126
|||||||||||||||||||||||
Sbjct: 144 tgcgtgccaaaggagaattgccc 166
>55093_zma-miR399c:pmrd
Length = 207
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 tgcgtgccaaaggagaattgccc 126
|||||||||||||||||||||||
Sbjct: 164 tgcgtgccaaaggagaattgccc 186
>54489_sbi-miR399a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 tgcgtgccaaaggagaattgccc 126
|||||||||||||||||||||||
Sbjct: 94 tgcgtgccaaaggagaattgccc 116
>54491_sbi-miR399c:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 gcgtgccaaaggagaattgccc 126
||||||||||||||||||||||
Sbjct: 88 gcgtgccaaaggagaattgccc 109
>48965_osa-miR399b:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 106 cgtgccaaaggagaattgccc 126
|||||||||||||||||||||
Sbjct: 65 cgtgccaaaggagaattgccc 85
>48964_osa-miR399a:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 106 cgtgccaaaggagaattgccc 126
|||||||||||||||||||||
Sbjct: 117 cgtgccaaaggagaattgccc 137
