miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54690_tae-miR408:pmrd
Length = 187
Score = 252 bits (127), Expect = 8e-68
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 1 attttgtgagtggagaggggggaggagacagggatggagcagagcaagggatgaggcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttgtgagtggagaggggggaggagacagggatggagcagagcaagggatgaggcaag 60
Query: 61 caacaaaatttaccacctgattatgagaagagggagagagttgccagagcttctgttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caacaaaatttaccacctgattatgagaagagggagagagttgccagagcttctgttgct 120
Query: 121 gttgttg 127
|||||||
Sbjct: 121 gttgttg 127
>54650_sof-miR408e:pmrd
Length = 283
Score = 56.0 bits (28), Expect = 1e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
||||||||||||| |||||||| |||||||||| | |||||||||||
Sbjct: 18 ggagacagggatgaggcagagcatgggatgaggccatcaacaaaattt 65
>54646_sof-miR408a:pmrd
Length = 283
Score = 56.0 bits (28), Expect = 1e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
||||||||||||| |||||||| |||||||||| | |||||||||||
Sbjct: 18 ggagacagggatgaggcagagcatgggatgaggccatcaacaaaattt 65
>54648_sof-miR408c:pmrd
Length = 286
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
||||||||||||| |||||||| |||||| ||| | |||||||||||
Sbjct: 18 ggagacagggatgaggcagagcatgggatggggccatcaacaaaattt 65
>54647_sof-miR408b:pmrd
Length = 286
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
||||||||||||| |||||||| |||||| ||| | |||||||||||
Sbjct: 18 ggagacagggatgaggcagagcatgggatggggccatcaacaaaattt 65
>54649_sof-miR408d:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 6e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
||||||||||| | |||||||| |||||| ||| | |||||||||||
Sbjct: 18 ggagacagggacgaggcagagcatgggatggggccatcaacaaaattt 65
>48975_osa-miR408:pmrd
Length = 213
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 22 gaggagacagggatggagcagagcaagggatg 53
||||||||||||||| |||||||| ||||||
Sbjct: 24 gaggagacagggatgaggcagagcatgggatg 55
