miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54691_tae-miR444:pmrd
Length = 426
Score = 844 bits (426), Expect = 0.0
Identities = 426/426 (100%)
Strand = Plus / Plus
Query: 1 gactcgagatatgcatgtggcggcaccgagcatgaggcaacaactgcattacttgcgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gactcgagatatgcatgtggcggcaccgagcatgaggcaacaactgcattacttgcgggg 60
Query: 61 aaggcgcaagtaggacacctgcattacttgcaaacaaggcgcaaaattaatagaagatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaggcgcaagtaggacacctgcattacttgcaaacaaggcgcaaaattaatagaagatca 120
Query: 121 ccatacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccatacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctt 180
Query: 181 tgccaaagctatcagaaaaaacataaagttctgttagtttccctaaactttaaaaacata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgccaaagctatcagaaaaaacataaagttctgttagtttccctaaactttaaaaacata 240
Query: 241 aagttctgttagtttccctaaactttaaaacatgttctacaaaattgatctagaaatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagttctgttagtttccctaaactttaaaacatgttctacaaaattgatctagaaatgat 300
Query: 301 tggcttactgtgctaatttaaagcaatataattactcgacaactgcatatgcacatgtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggcttactgtgctaatttaaagcaatataattactcgacaactgcatatgcacatgtta 360
Query: 361 gaagcaaggcagtagaatacttatgttttcatctactggcaggtagcaacatgtatagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaagcaaggcagtagaatacttatgttttcatctactggcaggtagcaacatgtatagat 420
Query: 421 atatca 426
||||||
Sbjct: 421 atatca 426
>54743_tae-miR2024b:pmrd
Length = 142
Score = 204 bits (103), Expect = 4e-53
Identities = 142/159 (89%), Gaps = 17/159 (10%)
Strand = Plus / Plus
Query: 19 ggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgcaagtaggacac 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgcaagtaggacac 60
Query: 79 ctgcattacttgcaaacaaggcgcaaaattaatagaagatcaccatacttgtggctttct 138
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 ctgcattacttgcaaacaaggcg-----------------caccatacttgtggctttct 103
Query: 139 tgcaagtcatgcagttgctgcctcaagcttgctgcctcc 177
|||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tgcaagtcatgcagttgctgcctcaagcttgctgcctcc 142
>55115_zma-miR444b:pmrd
Length = 174
Score = 69.9 bits (35), Expect = 2e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 153 ttgctgcctcaagcttgctgcctccctttgccaaagcta 191
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ttgctgcctcaagcttcctgcctccctttgccaaagcta 39
>55114_zma-miR444a:pmrd
Length = 138
Score = 69.9 bits (35), Expect = 2e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 153 ttgctgcctcaagcttgctgcctccctttgccaaa 187
|||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgctgcctcaagcttgctgcctccctttgccaaa 35
>54376_pvi-miR444:pmrd
Length = 127
Score = 69.9 bits (35), Expect = 2e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgcc 184
|||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 77 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
Score = 48.1 bits (24), Expect = 6e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 134 tttcttgcaagtcatgcagttgctgcctcaagcttg 169
||||||||||| |||||||||||||||| ||||||
Sbjct: 50 tttcttgcaagatatgcagttgctgcctctagcttg 15
>49007_osa-miR444f:pmrd
Length = 154
Score = 65.9 bits (33), Expect = 2e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 133 ctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 177
||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 109 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 153
Score = 46.1 bits (23), Expect = 2e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 22 ggcaccgagcatgaggcaacaactgcattacttgc 56
|||||| ||||||||| |||||||||||||||||
Sbjct: 6 ggcaccaagcatgaggttacaactgcattacttgc 40
>48798_oru-miR444:pmrd
Length = 165
Score = 65.9 bits (33), Expect = 2e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 133 ctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 177
||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 50.1 bits (25), Expect = 1e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 12 tgcatgtggcggcaccgagcatgaggcaacaactgcattacttgc 56
||||| ||| |||||| ||||||||| |||||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggttacaactgcattacttgc 45
>49006_osa-miR444e:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 2e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 140 gcaagtcatgcagttgctgcctcaagcttgctgcct 175
|||||| |||||||||||||||||||||| ||||||
Sbjct: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
>48319_bdi-miR444:pmrd
Length = 110
Score = 56.0 bits (28), Expect = 2e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 142 aagtcatgcagttgctgcctcaagcttgctgc 173
|||| |||||||||||||||||||||||||||
Sbjct: 79 aagttatgcagttgctgcctcaagcttgctgc 110
>54742_tae-miR2024a:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 9e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 22 ggcaccgagcatgaggcaacaactgcattacttgc 56
|||||| |||||||||| |||||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcgacaactgcattacttgc 35
Score = 50.1 bits (25), Expect = 1e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 133 ctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 177
|||||| |||||| ||||||||||| ||||||||||||| ||||
Sbjct: 74 ctttctcgcaagttgtgcagttgctgtctcaagcttgctgactcc 118
