miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54743_tae-miR2024b:pmrd
Length = 142
Score = 274 bits (138), Expect = 2e-74
Identities = 141/142 (99%)
Strand = Plus / Plus
Query: 12 ggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgcaagtaggacac 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgcaagtaggacac 60
Query: 72 ctgcattacttgcaaacaaggcgcaccatacttgtggctttcttgcaagtcgtgcagttg 131
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 ctgcattacttgcaaacaaggcgcaccatacttgtggctttcttgcaagtcatgcagttg 120
Query: 132 ctgcctcaagcttgctgcctcc 153
||||||||||||||||||||||
Sbjct: 121 ctgcctcaagcttgctgcctcc 142
>54691_tae-miR444:pmrd
Length = 426
Score = 218 bits (110), Expect = 1e-57
Identities = 152/170 (89%), Gaps = 17/170 (10%)
Strand = Plus / Plus
Query: 1 gatatgcatgtggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gatatgcatgtggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgc 67
Query: 61 aagtaggacacctgcattacttgcaaacaaggcg-----------------caccatact 103
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 68 aagtaggacacctgcattacttgcaaacaaggcgcaaaattaatagaagatcaccatact 127
Query: 104 tgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 128 tgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 177
>49007_osa-miR444f:pmrd
Length = 154
Score = 73.8 bits (37), Expect = 4e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 109 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 109 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 153
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 15 ggcaccgagcatgaggcaacaactgcattacttgc 49
|||||| ||||||||| |||||||||||||||||
Sbjct: 6 ggcaccaagcatgaggttacaactgcattacttgc 40
>48798_oru-miR444:pmrd
Length = 165
Score = 73.8 bits (37), Expect = 4e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 109 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 50.1 bits (25), Expect = 5e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 5 tgcatgtggcggcaccgagcatgaggcaacaactgcattacttgc 49
||||| ||| |||||| ||||||||| |||||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggttacaactgcattacttgc 45
>54376_pvi-miR444:pmrd
Length = 127
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
|||||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 77 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 110 tttcttgcaagtcgtgcagttgctgcctcaagcttg 145
||||||||||| ||||||||||||||| ||||||
Sbjct: 50 tttcttgcaagatatgcagttgctgcctctagcttg 15
>54742_tae-miR2024a:pmrd
Length = 118
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 109 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
|||||| |||||| |||||||||||| ||||||||||||| ||||
Sbjct: 74 ctttctcgcaagttgtgcagttgctgtctcaagcttgctgactcc 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 15 ggcaccgagcatgaggcaacaactgcattacttgc 49
|||||| |||||||||| |||||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcgacaactgcattacttgc 35
>48319_bdi-miR444:pmrd
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 124 tgcagttgctgcctcaagcttgctgc 149
||||||||||||||||||||||||||
Sbjct: 85 tgcagttgctgcctcaagcttgctgc 110
>55114_zma-miR444a:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 129 ttgctgcctcaagcttgctgcctcc 153
|||||||||||||||||||||||||
Sbjct: 1 ttgctgcctcaagcttgctgcctcc 25
>49006_osa-miR444e:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 124 tgcagttgctgcctcaagcttgctgcct 151
||||||||||||||||||||| ||||||
Sbjct: 99 tgcagttgctgcctcaagcttactgcct 126
>55115_zma-miR444b:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 ttgctgcctcaagcttgctgcctcc 153
|||||||||||||||| ||||||||
Sbjct: 1 ttgctgcctcaagcttcctgcctcc 25
