miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54695_tae-miR1120:pmrd
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtactccctccgtcccataatataagaacatttttgacagtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggccgcccgggcaggtactccctccgtcccataatataagaacatttttgacagtgta 60
Query: 61 gtgtcaaaaacattcttatattatgagacggagggagtatttcccagctcctgaatcac 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtcaaaaacattcttatattatgagacggagggagtatttcccagctcctgaatcac 119
Score = 83.8 bits (42), Expect = 3e-17
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 18 tactccctccgtcccataatataagaacatttttgacagtgtagtgtcaaaaacattctt 77
||||||||||||| ||||||||||||| ||||||||| | | ||||||||| |||||
Sbjct: 99 tactccctccgtctcataatataagaatgtttttgacactacactgtcaaaaatgttctt 40
Query: 78 atattatgagacggagggagta 99
|||||||| |||||||||||||
Sbjct: 39 atattatgggacggagggagta 18
>51255_osa-miRf12040-akr:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 aggtactccctccgtcccataatataag 42
||||||||||||||||||||||||||||
Sbjct: 6 aggtactccctccgtcccataatataag 33
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 75 cttatattatgagacggagggagta 99
||||||||||| |||||||||||||
Sbjct: 33 cttatattatgggacggagggagta 9
>51254_osa-miRf12039-akr:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 aggtactccctccgtcccataatataag 42
||||||||||||||||||||||||||||
Sbjct: 6 aggtactccctccgtcccataatataag 33
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 75 cttatattatgagacggagggagta 99
||||||||||| |||||||||||||
Sbjct: 33 cttatattatgggacggagggagta 9
>49070_osa-miR818d:pmrd
Length = 139
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 17 gtactccctccgtcccataatataag 42
||||||||||||||||||||||||||
Sbjct: 128 gtactccctccgtcccataatataag 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 cttatattatgagacggagggagta 99
||||||||||| |||||||||||||
Sbjct: 103 cttatattatgggacggagggagta 127
>51250_osa-miRf12035-akr:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 tactccctccgtcccataatataag 42
|||||||||||||||||||||||||
Sbjct: 10 tactccctccgtcccataatataag 34
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 18 tactccctccgtcccataatataag 42
|||||||||||||||||||||||||
Sbjct: 113 tactccctccgtcccataatataag 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 cttatattatgagacggagggagtat 100
||||||||||| ||||||||||||||
Sbjct: 89 cttatattatgggacggagggagtat 114
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 75 cttatattatgagacggagggagta 99
||||||||||| |||||||||||||
Sbjct: 34 cttatattatgggacggagggagta 10
>50738_osa-miRf11523-akr:pmrd
Length = 108
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 18 tactccctccgtcccataatataag 42
|||||||||||||||||||||||||
Sbjct: 97 tactccctccgtcccataatataag 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 cttatattatgagacggagggagtat 100
||||||||||| ||||||||||||||
Sbjct: 73 cttatattatgggacggagggagtat 98
>50587_osa-miRf11372-akr:pmrd
Length = 126
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 tactccctccgtcccataatataag 42
|||||||||||||||||||||||||
Sbjct: 7 tactccctccgtcccataatataag 31
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 18 tactccctccgtcccataatataag 42
|||||||||||||||||||||||||
Sbjct: 121 tactccctccgtcccataatataag 97
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 75 cttatattatgagacggagggagta 99
||||||||||| |||||||||||||
Sbjct: 31 cttatattatgggacggagggagta 7
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 cttatattatgagacggagggagta 99
||||||||||| |||||||||||||
Sbjct: 97 cttatattatgggacggagggagta 121
>49818_osa-miRf10603-akr:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 aggtactccctccgtcccataatataag 42
||||||||||||||||||| ||||||||
Sbjct: 95 aggtactccctccgtcccaaaatataag 68
>50275_osa-miRf11060-akr:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 gtactccctccgtcccataatataag 42
|||||||||||||||||| |||||||
Sbjct: 32 gtactccctccgtcccatgatataag 7
>50274_osa-miRf11059-akr:pmrd
Length = 172
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 gtactccctccgtcccataatataag 42
|||||||||||||||||| |||||||
Sbjct: 35 gtactccctccgtcccatgatataag 10
>49120_osa-miR1436:pmrd
Length = 161
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tactccctccgtcccataatat 39
||||||||||||||||||||||
Sbjct: 12 tactccctccgtcccataatat 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 18 tactccctccgtcccataat 37
||||||||||||||||||||
Sbjct: 142 tactccctccgtcccataat 123
