miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54696_tae-miR1121:pmrd
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tatatatgtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatatatgtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatc 60
Query: 61 taaacgctcttatatttctttacggagggagtactgta 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaacgctcttatatttctttacggagggagtactgta 98
Score = 85.7 bits (43), Expect = 5e-18
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
|||||||||| |||||||||||| |||| |||||||||||| |||||||||||| |
Sbjct: 94 gtactccctccgtaaagaaatataagagcgtttagatcactacttaagtgatctaaacac 35
Query: 68 tcttatatttctttacggagggagtac 94
||| |||||||||||| ||||||||||
Sbjct: 34 tctaatatttctttacagagggagtac 8
>48304_ave-miR1120:pmrd
Length = 85
Score = 103 bits (52), Expect = 2e-23
Identities = 78/87 (89%), Gaps = 6/87 (6%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
|||||||||||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct: 82 tactccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgct 29
Query: 69 cttatatttctttacggagggagtact 95
||||||||||||||| |||||||||||
Sbjct: 28 cttatatttctttacagagggagtact 2
Score = 93.7 bits (47), Expect = 2e-20
Identities = 76/86 (88%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct: 3 gtactccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgc 56
Query: 68 tcttatatttctttacggagggagta 93
|||||||||||||||| |||||||||
Sbjct: 57 tcttatatttctttacagagggagta 82
>54756_tmo-miR1120:pmrd
Length = 85
Score = 67.9 bits (34), Expect = 1e-12
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctctt 71
|||||||||||| ||||| ||| ||||||||||| ||||||||||||||| | ||||
Sbjct: 4 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 63
Query: 72 atatttctttacggagggagta 93
||||| ||||| |||||||||
Sbjct: 64 atattagtttacagagggagta 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| ||| ||||||||||| |||||||||||| | |
Sbjct: 85 tactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggt 26
Query: 69 cttatatttctttacggaggga 90
|||||||| ||||| ||||||
Sbjct: 25 cttatattagtttacagaggga 4
>54753_tae-miR2033b:pmrd
Length = 72
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcact 48
|||||| ||||||||||||||| |||||||||||||||||
Sbjct: 72 tactccttctgtaaagaaatataagagtgtttagatcact 33
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacgctcttatatttctttacggagggagta 93
||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 32 tagtgatctaaacactcttatatttctttacagaaggagta 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 64 acgctcttatatttctttacggagggagta 93
||||||||||||||||||| ||||||||||
Sbjct: 30 acgctcttatatttctttatggagggagta 1
>54761_tur-miR1120:pmrd
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgctctt 71
|||||||||||| ||||| ||| ||||||||||| ||||||||||||||| | ||||
Sbjct: 4 tccctctgtaaactaatataagaccttttagatcact-aagtagtgatctaaaaggtctt 62
Query: 72 atatttctttacggagggagta 93
||||| ||||| |||||||||
Sbjct: 63 atattagtttacagagggagta 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 68/82 (82%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgct 68
||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| | |
Sbjct: 84 tactccctctgtaaactaatataagaccttttagatcact-acttagtgatctaaaaggt 26
Query: 69 cttatatttctttacggaggga 90
|||||||| ||||| ||||||
Sbjct: 25 cttatattagtttacagaggga 4
>54752_tae-miR2033a:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatat 30
||||||||||||||||||||||
Sbjct: 96 tactccctctgtaaagaaatat 75
