miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54697_tae-miR1122:pmrd
Length = 295
Score = 585 bits (295), Expect = e-168
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 ataagtactccctctgttcctaaatactccctccgtcccaaaaattttggcttagatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataagtactccctctgttcctaaatactccctccgtcccaaaaattttggcttagatttg 60
Query: 61 tctaaatacgtatgtatcaagtcatgttttagtattagatacatccgtatctagactaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctaaatacgtatgtatcaagtcatgttttagtattagatacatccgtatctagactaat 120
Query: 121 ctaagacaagaattttgggacggagggagtataagtctttttagagattccactacaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctaagacaagaattttgggacggagggagtataagtctttttagagattccactacaaac 180
Query: 181 tacatacggatgtatatagacatattttagagtgtagattcactcattttacttcgtatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacatacggatgtatatagacatattttagagtgtagattcactcattttacttcgtatg 240
Query: 241 tagtccatagtggaatctctaagaaggcatatatttaggaacagagggtgtacca 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagtccatagtggaatctctaagaaggcatatatttaggaacagagggtgtacca 295
Score = 61.9 bits (31), Expect = 3e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 98 gatacatccgtatctagactaatctaagacaagaattttgggacggagggagtat 152
||||||| ||||| ||||| |||||||| ||| | ||||||||||||||||||||
Sbjct: 78 gatacatacgtatttagacaaatctaagccaaaatttttgggacggagggagtat 24
Score = 61.9 bits (31), Expect = 3e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 24 atactccctccgtcccaaaaattttggcttagatttgtctaaatacgtatgtatc 78
|||||||||||||||||||| | ||| |||||||| ||||| ||||| |||||||
Sbjct: 152 atactccctccgtcccaaaattcttgtcttagattagtctagatacggatgtatc 98
>48647_hpi-miR1122:pmrd
Length = 180
Score = 159 bits (80), Expect = 1e-39
Identities = 118/131 (90%)
Strand = Plus / Plus
Query: 22 aaatactccctccgtcccaaaaattttggcttagatttgtctaaatacgtatgtatcaag 81
|||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||| ||
Sbjct: 25 aaatactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctag 84
Query: 82 tcatgttttagtattagatacatccgtatctagactaatctaagacaagaattttgggac 141
|||||||||||| ||||| |||| | |||||| || |||||||||| |||||||||||||
Sbjct: 85 tcatgttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggac 144
Query: 142 ggagggagtat 152
|||||||||||
Sbjct: 145 ggagggagtat 155
Score = 99.6 bits (50), Expect = 1e-21
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 96 tagatacatccgtatctagactaatctaagacaagaattttgggacggagggagtataag 155
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 83 tagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagtatttg 24
Query: 156 tctttttagagatt 169
||||| ||||||||
Sbjct: 23 tctttctagagatt 10
>54757_tmo-miR1122:pmrd
Length = 180
Score = 119 bits (60), Expect = 1e-27
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 25 tactccctccgtcccaaaaattttggcttagatttgtctaaatacgtatgtatcaagtca 84
||||||||||||||||||| | ||| |||| ||||||||||||| | |||||| ||| |
Sbjct: 26 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtta 85
Query: 85 tgttttagtattagatacatccgtatctagactaatctaagacaagaattttgggacgga 144
||||||| ||||||||||||||||||| || ||| ||||||||||||||||||| |||
Sbjct: 86 cattttagtgttagatacatccgtatctaaacaaatgtaagacaagaattttgggatgga 145
Query: 145 ggga 148
||||
Sbjct: 146 ggga 149
Score = 65.9 bits (33), Expect = 2e-11
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 99 atacatccgtatctagactaatctaagacaagaattttgggacggagggagta 151
|||||||| ||| ||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 78 atacatccatatttagacaaatttaagacaacaattttgggacggagggagta 26
>54701_tae-miR1126:pmrd
Length = 164
Score = 105 bits (53), Expect = 2e-23
Identities = 113/133 (84%)
Strand = Plus / Minus
Query: 150 tataagtctttttagagattccactacaaactacatacggatgtatatagacatatttta 209
||||||||||| |||||||| |||| ||| ||||||| |||||| |||| ||||||
Sbjct: 144 tataagtctttgtagagattttactatgaaccacatacgaatgtatgtagatgcatttta 85
Query: 210 gagtgtagattcactcattttacttcgtatgtagtccatagtggaatctctaagaaggca 269
||||||||||||| | ||||| || |||||||||||||||||||||| |||| ||| |
Sbjct: 84 gagtgtagattcatttattttgctccgtatgtagtccatagtggaatttctataaagact 25
Query: 270 tatatttaggaac 282
|||||||||||||
Sbjct: 24 tatatttaggaac 12
Score = 42.1 bits (21), Expect = 2e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 150 tataagtctttttagagattccactacaaactacatacgga 190
||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 21 tataagtctttatagaaattccactatggactacatacgga 61
>54762_tur-miR1122:pmrd
Length = 180
Score = 69.9 bits (35), Expect = 1e-12
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 51 cttagatttgtctaaatacgtatgtatcaagtcatgttttagtattagatacatccgtat 110
|||||||||||||| ||||| |||||| | ||| ||||||| |||||||||| |||||
Sbjct: 52 cttagatttgtctacatacgaatgtatttattcacattttagtgttagatacattcgtat 111
Query: 111 ctagactaatctaagacaagaattttgggacggagggagtata 153
|| | ||| ||||| |||||||||||||| |||| ||||||
Sbjct: 112 ttaaataaatttaagataagaattttgggacagaggaagtata 154
>49537_osa-miRf10322-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 132 attttgggacggagggagtataa 154
|||||||||||||||||||||||
Sbjct: 29 attttgggacggagggagtataa 7
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 atactccctccgtcccaaaa 43
||||||||||||||||||||
Sbjct: 9 atactccctccgtcccaaaa 28
>49536_osa-miRf10321-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 132 attttgggacggagggagtataa 154
|||||||||||||||||||||||
Sbjct: 29 attttgggacggagggagtataa 7
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 atactccctccgtcccaaaa 43
||||||||||||||||||||
Sbjct: 9 atactccctccgtcccaaaa 28
>49517_osa-miRf10302-akr:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 132 attttgggacggagggagtataa 154
|||||||||||||||||||||||
Sbjct: 78 attttgggacggagggagtataa 100
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aatactccctccgtcccaaaa 43
|||||||||||||||||||||
Sbjct: 5 aatactccctccgtcccaaaa 25
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 132 attttgggacggagggagtat 152
|||||||||||||||||||||
Sbjct: 26 attttgggacggagggagtat 6
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 atactccctccgtcccaaaa 43
||||||||||||||||||||
Sbjct: 98 atactccctccgtcccaaaa 79
>49366_osa-miRf10151-akr:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 attttgggacggagggagtata 153
||||||||||||||||||||||
Sbjct: 60 attttgggacggagggagtata 81
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 atactccctccgtcccaaaa 43
||||||||||||||||||||
Sbjct: 80 atactccctccgtcccaaaa 61
>50953_osa-miRf11738-akr:pmrd
Length = 162
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 atactccctccgtcccaaaaa 44
|||||||||||||||||||||
Sbjct: 9 atactccctccgtcccaaaaa 29
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 133 ttttgggacggagggagtat 152
||||||||||||||||||||
Sbjct: 28 ttttgggacggagggagtat 9
>50531_osa-miRf11316-akr:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 6 tactccctctgttcctaaata 26
|||||||||||||||||||||
Sbjct: 77 tactccctctgttcctaaata 57
>49958_osa-miRf10743-akr:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 132 attttgggacggagggagtat 152
|||||||||||||||||||||
Sbjct: 31 attttgggacggagggagtat 11
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 atactccctccgtcccaaaa 43
||||||||||||||||||||
Sbjct: 11 atactccctccgtcccaaaa 30
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 132 attttgggacggagggagta 151
||||||||||||||||||||
Sbjct: 91 attttgggacggagggagta 110
>49957_osa-miRf10742-akr:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 132 attttgggacggagggagtat 152
|||||||||||||||||||||
Sbjct: 96 attttgggacggagggagtat 116
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 132 attttgggacggagggagta 151
||||||||||||||||||||
Sbjct: 36 attttgggacggagggagta 17
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 atactccctccgtcccaaaa 43
||||||||||||||||||||
Sbjct: 116 atactccctccgtcccaaaa 97
>49433_osa-miRf10218-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 133 ttttgggacggagggagtata 153
|||||||||||||||||||||
Sbjct: 29 ttttgggacggagggagtata 9
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 atactccctccgtcccaaaaa 44
|||||||||||||||||||||
Sbjct: 10 atactccctccgtcccaaaaa 30
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 24 atactccctccgtcccaaaaa 44
|||||||||||||||||||||
Sbjct: 84 atactccctccgtcccaaaaa 64
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 133 ttttgggacggagggagtat 152
||||||||||||||||||||
Sbjct: 65 ttttgggacggagggagtat 84
>49156_osa-miR1862e:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 132 attttgggacggagggagtat 152
|||||||||||||||||||||
Sbjct: 72 attttgggacggagggagtat 92
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 atactccctccgtcccaaaa 43
||||||||||||||||||||
Sbjct: 92 atactccctccgtcccaaaa 73
