miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54701_tae-miR1126:pmrd
Length = 164
Score = 325 bits (164), Expect = 6e-90
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 1 gtactctctccgttcctaaatataagtctttatagaaattccactatggactacatacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtactctctccgttcctaaatataagtctttatagaaattccactatggactacatacgg 60
Query: 61 agcaaaataaatgaatctacactctaaaatgcatctacatacattcgtatgtggttcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcaaaataaatgaatctacactctaaaatgcatctacatacattcgtatgtggttcata 120
Query: 121 gtaaaatctctacaaagacttatatttagaaacggagggagtat 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtaaaatctctacaaagacttatatttagaaacggagggagtat 164
Score = 52.0 bits (26), Expect = 1e-07
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 106 cgtatgtggttcatagtaaaatctctacaaagacttatatttagaaacggagggagta 163
||||||| || |||||| ||| |||| |||||||||||||||| ||||||| |||||
Sbjct: 59 cgtatgtagtccatagtggaatttctataaagacttatatttaggaacggagagagta 2
Score = 52.0 bits (26), Expect = 1e-07
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 2 tactctctccgttcctaaatataagtctttatagaaattccactatggactacatacg 59
||||| ||||||| |||||||||||||||| |||| ||| |||||| || |||||||
Sbjct: 163 tactccctccgtttctaaatataagtctttgtagagattttactatgaaccacatacg 106
>54697_tae-miR1122:pmrd
Length = 295
Score = 105 bits (53), Expect = 1e-23
Identities = 113/133 (84%)
Strand = Plus / Minus
Query: 12 gttcctaaatataagtctttatagaaattccactatggactacatacggagcaaaataaa 71
||||||||||||| | ||| |||| |||||||||||||||||||||| || ||||| |
Sbjct: 282 gttcctaaatatatgccttcttagagattccactatggactacatacgaagtaaaatgag 223
Query: 72 tgaatctacactctaaaatgcatctacatacattcgtatgtggttcatagtaaaatctct 131
||||||||||||||||||| |||| |||||| ||||||| ||| |||| |||||||
Sbjct: 222 tgaatctacactctaaaatatgtctatatacatccgtatgtagtttgtagtggaatctct 163
Query: 132 acaaagacttata 144
| |||||||||||
Sbjct: 162 aaaaagacttata 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 21 tataagtctttatagaaattccactatggactacatacgga 61
||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 150 tataagtctttttagagattccactacaaactacatacgga 190
>50531_osa-miRf11316-akr:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gtactctctccgttcctaaatataag 26
|||||| |||||||||||||||||||
Sbjct: 5 gtactccctccgttcctaaatataag 30
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 139 cttatatttagaaacggagggagta 163
||||||||||| |||||||||||||
Sbjct: 30 cttatatttaggaacggagggagta 6
>49031_osa-miR806h:pmrd
Length = 271
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 144 atttagaaacggagggagta 163
||||||||||||||||||||
Sbjct: 233 atttagaaacggagggagta 252
