miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54703_tae-miR1128:pmrd
Length = 188
Score = 355 bits (179), Expect = 8e-99
Identities = 188/190 (98%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 1 atatgagagcatgggtgagaggtgcttagttactactccctccgtccgaaaatacttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatgagagcatgggtgagaggtgcttagttactactccctccgtccgaaaatacttgtc 60
Query: 61 atcaaaatgaataaaaaaggggatgtatctagaactaaaatacatctagatacatcccct 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaaaatgaataaaa--ggggatgtatctagaactaaaatacatctagatacatcccct 118
Query: 121 tctatccattttgatgacaactatttccggacggagggagtaattgcttcttctggcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tctatccattttgatgacaactatttccggacggagggagtaattgcttcttctggcttg 178
Query: 181 gcgtttatgt 190
||||||||||
Sbjct: 179 gcgtttatgt 188
Score = 115 bits (58), Expect = 1e-26
Identities = 112/129 (86%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 34 tactccctccgtccgaaaatacttgtcatcaaaatgaataaaaaaggggatgtatctaga 93
||||||||||||||| ||||| |||||||||||||| ||| || |||||||||||||||
Sbjct: 160 tactccctccgtccggaaatagttgtcatcaaaatggatagaa--ggggatgtatctaga 103
Query: 94 actaaaatacatctagatacatccccttctatccattttgatgacaactatttccggacg 153
|| || ||||||||||||||||| ||| |||||||||||||| ||||| ||||||
Sbjct: 102 tgtattttagttctagatacatccccttttattcattttgatgacaagtattttcggacg 43
Query: 154 gagggagta 162
|||||||||
Sbjct: 42 gagggagta 34
>54711_tae-miR1136:pmrd
Length = 107
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 81 ggatgtatctagaactaaaatacatctagatacatcc 117
|||||||| ||||||||||||||||||||||||||||
Sbjct: 72 ggatgtatttagaactaaaatacatctagatacatcc 36
>46909_ata-miR1122:pmrd
Length = 170
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 81 ggatgtatctagaactaaaatacatctagatacatcc 117
||||||||||||||||||||||| |||||||||||||
Sbjct: 97 ggatgtatctagaactaaaatacgtctagatacatcc 61
>54710_tae-miR1135:pmrd
Length = 109
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 81 ggatgtatctagaactaaaatacatctagatacatc 116
||||||||||||||||||||||| ||||||||||||
Sbjct: 37 ggatgtatctagaactaaaatacgtctagatacatc 72
>54702_tae-miR1127:pmrd
Length = 150
Score = 54.0 bits (27), Expect = 4e-08
Identities = 70/82 (85%), Gaps = 3/82 (3%)
Strand = Plus / Minus
Query: 34 tactccctccgtccgaaaatacttgtcatcaaaatgaataaaaaaggggatgtatctaga 93
|||||||||||| || || ||||||||| ||||||| |||||| || ||||||||| |
Sbjct: 134 tactccctccgttcggaattacttgtcacaaaaatga-taaaaatgg--atgtatctaca 78
Query: 94 actaaaatacatctagatacat 115
|||||||| ||| |||||||||
Sbjct: 77 actaaaatgcatttagatacat 56
>48647_hpi-miR1122:pmrd
Length = 180
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 tactccctccgtccgaaaatacttgtcat 62
|||||||||||||| ||||| ||||||||
Sbjct: 28 tactccctccgtcccaaaattcttgtcat 56
