miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50086_osa-miRf10871-akr:pmrd
Length = 142
Score = 73.8 bits (37), Expect = 3e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcgaga 128
||||||||||||||| ||||||||| | ||||||||||||| |||||||||||
Sbjct: 82 tagatccaacgatcggaaacgatttggtaccatgaggtaccggtacctcgaga 134
Score = 61.9 bits (31), Expect = 1e-10
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatctaactgggtaagatagacatt 73
|||||||||||| || |||| |||| ||||||||||||||| || |||| ||| || |||
Sbjct: 122 ggtacctcatggtaccaaatcgtttccgatcgttggatctagctaggtaggatggatatt 63
Query: 74 gttagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctc 124
|||| || ||| ||| ||| ||||| | ||| ||||||||| |||||||
Sbjct: 62 gttatattcaatgattagaaatgatttggtaccgtgaggtaccggtacctc 12
>50088_osa-miRf10873-akr:pmrd
Length = 125
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcgag 127
||||||||||||||| ||||||||| | ||||||||||||| ||||||||||
Sbjct: 74 tagatccaacgatcggaaacgatttggtaccatgaggtaccggtacctcgag 125
Score = 61.9 bits (31), Expect = 1e-10
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatctaactgggtaagatagacatt 73
|||||||||||| || |||| |||| ||||||||||||||| || |||| ||| || |||
Sbjct: 114 ggtacctcatggtaccaaatcgtttccgatcgttggatctagctaggtaggatggatatt 55
Query: 74 gttagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctc 124
|||| || ||| ||| ||| ||||| | ||| ||||||||| |||||||
Sbjct: 54 gttatattcaatgattagaaatgatttggtaccgtgaggtaccggtacctc 4
>50087_osa-miRf10872-akr:pmrd
Length = 125
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcgag 127
||||||||||||||| ||||||||| | ||||||||||||| ||||||||||
Sbjct: 74 tagatccaacgatcggaaacgatttggtaccatgaggtaccggtacctcgag 125
Score = 61.9 bits (31), Expect = 1e-10
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatctaactgggtaagatagacatt 73
|||||||||||| || |||| |||| ||||||||||||||| || |||| ||| || |||
Sbjct: 114 ggtacctcatggtaccaaatcgtttccgatcgttggatctagctaggtaggatggatatt 55
Query: 74 gttagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctc 124
|||| || ||| ||| ||| ||||| | ||| ||||||||| |||||||
Sbjct: 54 gttatattcaatgattagaaatgatttggtaccgtgaggtaccggtacctc 4
>51187_osa-miRf11972-akr:pmrd
Length = 122
Score = 69.9 bits (35), Expect = 4e-13
Identities = 86/103 (83%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatctaactgggtaagatagacatt 73
||||||||| || || ||||||||| || |||||| ||||| ||||| | ||| | | |
Sbjct: 111 ggtacctcacggtaccaaattgtttccggtcgttgaatctagctgggcaggatgggtact 52
Query: 74 gttagatccaacgatcgaaaacgatttagcaccatgaggtacc 116
||||||||||||||||| ||||||||||| ||| | |||||||
Sbjct: 51 gttagatccaacgatcggaaacgatttagtaccctcaggtacc 9
Score = 46.1 bits (23), Expect = 6e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatctaac 56
||||||| | || ||||||| |||| |||||||||||||||||
Sbjct: 9 ggtacctgagggtactaaatcgtttccgatcgttggatctaac 51
>50089_osa-miRf10874-akr:pmrd
Length = 123
Score = 69.9 bits (35), Expect = 4e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcga 126
||||||||||||||| ||||||||| | ||||||||||||| |||||||||
Sbjct: 73 tagatccaacgatcggaaacgatttggtaccatgaggtaccggtacctcga 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatctaactgggtaagatagacatt 73
|||||||||||| || |||| |||| ||||||||||||||| || |||| ||| || |||
Sbjct: 113 ggtacctcatggtaccaaatcgtttccgatcgttggatctagctaggtaggatggatatt 54
Query: 74 gttagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctc 124
|||| || ||| ||| ||| ||||| | ||| ||||||||| |||||||
Sbjct: 53 gttatattcaatgattagaaatgatttggtaccgtgaggtaccggtacctc 3
>51020_osa-miRf11805-akr:pmrd
Length = 125
Score = 65.9 bits (33), Expect = 7e-12
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 71 attgttagatccaacgatcgaaaacgatttagcaccatgaggtaccagt 119
|||||||||||||||||||| ||||||||| ||||| | ||||||||||
Sbjct: 57 attgttagatccaacgatcggaaacgattttgcaccgtaaggtaccagt 9
>50297_osa-miRf11082-akr:pmrd
Length = 119
Score = 61.9 bits (31), Expect = 1e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 70 cattgttagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctc 124
|||||||||||||||| |||||||||||||| | ||| |||| |||| |||||||
Sbjct: 55 cattgttagatccaacaatcgaaaacgatttggtaccgtgagataccggtacctc 1
>51206_osa-miRf11991-akr:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatctaactgggtaagatagacatt 73
||||||||| || |||||||| ||| ||||| ||| ||||| |||| || || | ||||
Sbjct: 113 ggtacctcacggtactaaattatttccgatcattgaatctagctggatagaatgggcatt 54
Query: 74 gttagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcga 126
||||||||||||||| |||||| || | ||| |||||||| |||||||||
Sbjct: 53 tttagatccaacgatcagaaacgacttggtaccgtgaggtactggtacctcga 1
>51041_osa-miRf11826-akr:pmrd
Length = 112
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcgaga 128
||||||||||||||| ||||||||| | ||| |||| |||| |||||||||||
Sbjct: 62 tagatccaacgatcggaaacgatttggtaccgtgagataccggtacctcgaga 10
>51040_osa-miRf11825-akr:pmrd
Length = 112
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcgaga 128
||||||||||||||| ||||||||| | ||| |||| |||| |||||||||||
Sbjct: 51 tagatccaacgatcggaaacgatttggtaccgtgagataccggtacctcgaga 103
>50343_osa-miRf11128-akr:pmrd
Length = 104
Score = 56.0 bits (28), Expect = 6e-09
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 77 agatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcgaga 128
||||||||||||| |||||||||| | ||| ||||||||| ||||||||||
Sbjct: 57 agatccaacgatcaaaaacgatttggtaccgtgaggtaccgatacctcgaga 6
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatct 53
||||||||| || || |||| ||||| |||||||||||||
Sbjct: 18 ggtacctcacggtaccaaatcgtttttgatcgttggatct 57
>50917_osa-miRf11702-akr:pmrd
Length = 122
Score = 54.0 bits (27), Expect = 3e-08
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatctaactgggtaagatagacatt 73
||||||||| || |||||||||||| |||||| |||| || ||||| | ||| ||| ||
Sbjct: 16 ggtacctcacggtactaaattgtttccgatcg-aggatttagctgggcaggatggacgtt 74
Query: 74 gttagatccaacgat 88
|||||||||||||||
Sbjct: 75 gttagatccaacgat 89
>50916_osa-miRf11701-akr:pmrd
Length = 132
Score = 54.0 bits (27), Expect = 3e-08
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatctaactgggtaagatagacatt 73
||||||||| || |||||||||||| |||||| |||| || ||||| | ||| ||| ||
Sbjct: 21 ggtacctcacggtactaaattgtttccgatcg-aggatttagctgggcaggatggacgtt 79
Query: 74 gttagatccaacgat 88
|||||||||||||||
Sbjct: 80 gttagatccaacgat 94
>50344_osa-miRf11129-akr:pmrd
Length = 92
Score = 54.0 bits (27), Expect = 3e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 77 agatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcgag 127
||||||||||||| |||||||||| | ||| ||||||||| |||||||||
Sbjct: 42 agatccaacgatcaaaaacgatttggtaccgtgaggtaccgatacctcgag 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatct 53
||||||||| || || |||| ||||| |||||||||||||
Sbjct: 81 ggtacctcacggtaccaaatcgtttttgatcgttggatct 42
>51208_osa-miRf11993-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 1e-07
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 35 gttttcgatcgttggatctaactgggtaagatagacattgttagatccaacgat 88
|||| ||||||||||||||| ||||||| ||| | ||| ||||||||||||||
Sbjct: 74 gtttccgatcgttggatctagctgggtaggatgggtattattagatccaacgat 21
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 tagatccaacgatcgaaaacgatt 99
||||||||||||||| ||||||||
Sbjct: 55 tagatccaacgatcggaaacgatt 78
>51207_osa-miRf11992-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 35 gttttcgatcgttggatctaactgggtaagatagacattgttagatccaacgat 88
|||| ||||||||||||||| ||||||| ||| | ||| ||||||||||||||
Sbjct: 20 gtttccgatcgttggatctagctgggtaggatgggtattattagatccaacgat 73
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 76 tagatccaacgatcgaaaacgatt 99
||||||||||||||| ||||||||
Sbjct: 39 tagatccaacgatcggaaacgatt 16
>50904_osa-miRf11689-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/41 (92%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatcta 54
|||||||||||| | |||||||||||||||||||||||||
Sbjct: 15 ggtacctcatggta--aaattgttttcgatcgttggatcta 53
Score = 50.1 bits (25), Expect = 4e-07
Identities = 43/48 (89%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacct 123
|||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 53 tagatccaacgatcgaaaacaattt--taccatgaggtaccggtacct 8
>50903_osa-miRf11688-akr:pmrd
Length = 117
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/41 (92%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatcta 54
|||||||||||| | |||||||||||||||||||||||||
Sbjct: 21 ggtacctcatggta--aaattgttttcgatcgttggatcta 59
Score = 50.1 bits (25), Expect = 4e-07
Identities = 43/48 (89%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacct 123
|||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 59 tagatccaacgatcgaaaacaattt--taccatgaggtaccggtacct 14
>50575_osa-miRf11360-akr:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatcta 54
||||||||| || || ||||| |||||||||||||||||||
Sbjct: 22 ggtacctcacggtaccaaattattttcgatcgttggatcta 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtacc 116
||||||||||||||||||| |||| | ||| |||||||||
Sbjct: 62 tagatccaacgatcgaaaataatttggtaccgtgaggtacc 22
>50574_osa-miRf11359-akr:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttggatcta 54
||||||||| || || ||||| |||||||||||||||||||
Sbjct: 100 ggtacctcacggtaccaaattattttcgatcgttggatcta 60
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtacc 116
||||||||||||||||||| |||| | ||| |||||||||
Sbjct: 60 tagatccaacgatcgaaaataatttggtaccgtgaggtacc 100
>50250_osa-miRf11035-akr:pmrd
Length = 144
Score = 50.1 bits (25), Expect = 4e-07
Identities = 74/89 (83%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 40 cgatcgttggatctaactgggtaagatagacattgttagatccaacgatcgaaaacgatt 99
||||||||||||||| |||| ||||| |||| ||||||| ||||||||||||| |||
Sbjct: 48 cgatcgttggatctagctggc-aagatgagcattattagatctaacgatcgaaaacaatt 106
Query: 100 tagcaccatgaggtaccagtacctcgaga 128
| | | ||||||||| |||||||||||
Sbjct: 107 aggtatcgtgaggtaccggtacctcgaga 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 31 aattgttttcgatcgttggatctaa 55
||||||||||||||||| |||||||
Sbjct: 106 aattgttttcgatcgttagatctaa 82
>50224_osa-miRf11009-akr:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 41 gatcgttggatctaactgggtaagatagacattgttagatccaacgatcgaaaacgattt 100
|||||||||||||| ||| | ||| |||||||||| ||||| ||| | |||||||||
Sbjct: 84 gatcgttggatctagttggtcaggatggacattgttacgtccaatgattggaaacgattt 25
Query: 101 agcaccatgaggtaccagtacctc 124
|| ||| | ||||||| |||||||
Sbjct: 24 agtaccgttaggtaccggtacctc 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 76 tagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctc 124
|||||||||||||| ||| ||||| | ||| ||||||||| |||||||
Sbjct: 71 tagatccaacgatcagaaatgatttggtaccgtgaggtaccggtacctc 119
>49899_osa-miRf10684-akr:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 72 ttgttagatccaacgatcgaaaacgatttagcaccatgaggta 114
|||||||||||||| |||||||| ||||| | ||| |||||||
Sbjct: 53 ttgttagatccaacaatcgaaaatgatttggtaccgtgaggta 11
>50422_osa-miRf11207-akr:pmrd
Length = 143
Score = 42.1 bits (21), Expect = 1e-04
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 71 attgttagatccaacgatcgaaaacgatttagcaccatgaggtaccagtacctcgag 127
||||||||||| |||||| ||| |||||| ||| ||||||||| ||||||||||
Sbjct: 66 attgttagatctaacgataagaaatgatttaataccgtgaggtaccggtacctcgag 10
>50220_osa-miRf11005-akr:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 104 accatgaggtaccagtacctcgag 127
||||||||||| ||||||||||||
Sbjct: 109 accatgaggtagcagtacctcgag 132
>49418_osa-miRf10203-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttgg 49
||||||||| | |||||||||||| ||||||||||
Sbjct: 81 ggtacctcacgttactaaattgtttccgatcgttgg 46
>49417_osa-miRf10202-akr:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 14 ggtacctcatgggactaaattgttttcgatcgttgg 49
||||||||| | |||||||||||| ||||||||||
Sbjct: 85 ggtacctcacgttactaaattgtttccgatcgttgg 50
