miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>49395_osa-miRf10180-akr:pmrd
          Length = 96

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 72 tcctaagacaacgaatctggaca 94
          |||||||||||||||||||||||
Sbjct: 41 tcctaagacaacgaatctggaca 63

>49394_osa-miRf10179-akr:pmrd
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 72 tcctaagacaacgaatctggaca 94
          |||||||||||||||||||||||
Sbjct: 61 tcctaagacaacgaatctggaca 39

>51251_osa-miRf12036-akr:pmrd
          Length = 109

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 70 attcctaagacaacgaatctggaca 94
          ||||||| |||||||||||||||||
Sbjct: 9  attcctaggacaacgaatctggaca 33

>50834_osa-miRf11619-akr:pmrd
          Length = 141

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 105 tccagattcgtcatttcaggataggtcacattc 137
           |||||||||||||||| ||||| || |||||||
Sbjct: 79  tccagattcgtcattttaggatgggccacattc 111

>50833_osa-miRf11618-akr:pmrd
          Length = 143

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 105 tccagattcgtcatttcaggataggtcacattc 137
           |||||||||||||||| ||||| || |||||||
Sbjct: 64  tccagattcgtcattttaggatgggccacattc 32

>50504_osa-miRf11289-akr:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 74 ctaagacaacgaatctggac 93
          ||||||||||||||||||||
Sbjct: 73 ctaagacaacgaatctggac 54