miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48866_osa-miR167h:pmrd
Length = 120
Score = 147 bits (74), Expect = 2e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 46 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 105
Query: 106 tttcatctgctggt 119
||||||||||||||
Sbjct: 106 tttcatctgctggt 119
>48869_osa-miR167m:pmrd
Length = 100
Score = 129 bits (65), Expect = 5e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 46 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 95
Query: 106 tttca 110
|||||
Sbjct: 96 tttca 100
>54635_sof-miR167b:pmrd
Length = 188
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 89 atcaggtcatgctgtagtttcatctgctggt 119
|||||||||||||||||||||||||||||||
Sbjct: 148 atcaggtcatgctgtagtttcatctgctggt 178
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cacaagttggtgaagctgccagc 23
|||||||||||||||||||||||
Sbjct: 11 cacaagttggtgaagctgccagc 33
>54634_sof-miR167a:pmrd
Length = 188
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 89 atcaggtcatgctgtagtttcatctgctggt 119
|||||||||||||||||||||||||||||||
Sbjct: 148 atcaggtcatgctgtagtttcatctgctggt 178
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cacaagttggtgaagctgccagc 23
|||||||||||||||||||||||
Sbjct: 11 cacaagttggtgaagctgccagc 33
>54984_zma-miR167g:pmrd
Length = 243
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 91 caggtcatgctgtagtttcatctgctggt 119
|||||||||||||||||||||||||||||
Sbjct: 205 caggtcatgctgtagtttcatctgctggt 233
>54431_sbi-miR167e:pmrd
Length = 179
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 89 atcaggtcatgctgtagtttcatctgctggt 119
|||||||||||||||||||||||| ||||||
Sbjct: 139 atcaggtcatgctgtagtttcatccgctggt 169
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cacaagttggtgaagctgccagc 23
|||||||||||||||||||||||
Sbjct: 11 cacaagttggtgaagctgccagc 33
>54654_ssp-miR167:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 atcaggtcatgctgtagtttca 110
||||||||||||||||||||||
Sbjct: 118 atcaggtcatgctgtagtttca 139
