miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48866_osa-miR167h:pmrd
Length = 120
Score = 149 bits (75), Expect = 7e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 67 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 105
Query: 127 tttcatctgctggtt 141
|||||||||||||||
Sbjct: 106 tttcatctgctggtt 120
>48869_osa-miR167m:pmrd
Length = 100
Score = 129 bits (65), Expect = 7e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 67 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 95
Query: 127 tttca 131
|||||
Sbjct: 96 tttca 100
>54635_sof-miR167b:pmrd
Length = 188
Score = 65.9 bits (33), Expect = 9e-12
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 110 atcaggtcatgctgtagtttcatctgctggttgggagcaca 150
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 148 atcaggtcatgctgtagtttcatctgctgg-tgggagcaca 187
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 15 ggtgcaccacaagtgggtgaagctggcagc 44
|||||||||||||| |||||||||| ||||
Sbjct: 4 ggtgcaccacaagttggtgaagctgccagc 33
>54634_sof-miR167a:pmrd
Length = 188
Score = 65.9 bits (33), Expect = 9e-12
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 110 atcaggtcatgctgtagtttcatctgctggttgggagcaca 150
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 148 atcaggtcatgctgtagtttcatctgctgg-tgggagcaca 187
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 15 ggtgcaccacaagtgggtgaagctggcagc 44
|||||||||||||| |||||||||| ||||
Sbjct: 4 ggtgcaccacaagttggtgaagctgccagc 33
>54984_zma-miR167g:pmrd
Length = 243
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 112 caggtcatgctgtagtttcatctgctggt 140
|||||||||||||||||||||||||||||
Sbjct: 205 caggtcatgctgtagtttcatctgctggt 233
>54431_sbi-miR167e:pmrd
Length = 179
Score = 58.0 bits (29), Expect = 2e-09
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 110 atcaggtcatgctgtagtttcatctgctggttgggagcaca 150
|||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 139 atcaggtcatgctgtagtttcatccgctgg-tgggagcaca 178
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 15 ggtgcaccacaagtgggtgaagctggcagc 44
|||||||||||||| |||||||||| ||||
Sbjct: 4 ggtgcaccacaagttggtgaagctgccagc 33
>54654_ssp-miR167:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 atcaggtcatgctgtagtttca 131
||||||||||||||||||||||
Sbjct: 118 atcaggtcatgctgtagtttca 139
