miRNEST 2.0, an integrative microRNA resource :: BLAST
>48572_gma-miR319a:pmrd
Length = 207
Score = 202 bits (102), Expect = 6e-53
Identities = 152/166 (91%), Gaps = 2/166 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 60
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 23 gagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactcattca 82
Query: 61 tccaaatgctgagtagtgatactcttaaagatactcatcaaatgagtgaatgatgcggga 120
|||||||| ||||| || | | |||| ||||||| || |||||||||||||||||||
Sbjct: 83 tccaaatgttgagt-gtaag-cgaataaatatactcagcagatgagtgaatgatgcggga 140
Query: 121 gacaaattgattcttaagtttcctgtacttggactgaagggagctc 166
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 141 gacaaattgaatcttaagtttcctgtacttggactgaagggagctc 186
>48573_gma-miR319b:pmrd
Length = 208
Score = 194 bits (98), Expect = 1e-50
Identities = 153/168 (91%), Gaps = 5/168 (2%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagatt-caattagctgccgactcattc 59
||||||||||||||||||| || |||| || ||||||| |||||||||||||||||||||
Sbjct: 23 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 82
Query: 60 atccaaatgctgagtagtgata-ctcttaaagatactcatcaaatgagtgaatgatgcgg 118
||||||||||||||| || | | ||||||||||| ||||||||||||||||||||
Sbjct: 83 atccaaatgctgagt---gaaagcgaagaaagatactcagcaaatgagtgaatgatgcgg 139
Query: 119 gagacaaattgattcttaagtttcctgtacttggactgaagggagctc 166
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gagacaaattgattcttaagtttcctgtacttggactgaagggagctc 187
>51707_ptc-miR319a:pmrd
Length = 188
Score = 135 bits (68), Expect = 1e-32
Identities = 144/167 (86%), Gaps = 3/167 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 60
|||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 72
Query: 61 tccaaatgctgagtagtgatactcttaaagat-actcatcaaatgagtgaatgatgcggg 119
||||||| |||||| | | | |||| || || ||||||||||||||||||||
Sbjct: 73 tccaaatactgagt--taaaggacaaggagattacccagtaaatgagtgaatgatgcggg 130
Query: 120 agacaaattgattcttaagtttcctgtacttggactgaagggagctc 166
||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 131 agacaaattgaatcctaagcttcctgtacttggactgaagggagctc 177
>54844_vvi-miR319c:pmrd
Length = 182
Score = 121 bits (61), Expect = 2e-28
Identities = 140/167 (83%), Gaps = 12/167 (7%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 60
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcattca 72
Query: 61 tccaaatgctgagtagtgatactcttaaaga-tactcatcaaatgagtgaatgatgcggg 119
||||||| ||| | |||| || ||| || |||||| |||||||||||||
Sbjct: 73 tccaaatactg-----------tgttaaggactacccagtaaatgattgaatgatgcggg 121
Query: 120 agacaaattgattcttaagtttcctgtacttggactgaagggagctc 166
|||||||||| ||||||| | ||||| |||||||||||||||||||
Sbjct: 122 agacaaattggatcttaagctccctgtgcttggactgaagggagctc 168
>46884_aqc-miR319:pmrd
Length = 177
Score = 87.7 bits (44), Expect = 2e-18
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 60
||||| |||||||||||||||||||| | ||| |||||||||| ||||||||||||||||
Sbjct: 4 gagctctcttcagtccactcataggtagtagtcagattcaatttgctgccgactcattca 63
Query: 61 tcca 64
||||
Sbjct: 64 tcca 67
Score = 61.9 bits (31), Expect = 1e-10
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 159
|||||| |||||||| ||||||| ||||| ||||| | ||| ||||||||||||||||
Sbjct: 106 aaatgaatgaatgatccgggagattaattggatcttatgcttcttgtacttggactgaag 165
Query: 160 ggagctc 166
|||||||
Sbjct: 166 ggagctc 172
>51708_ptc-miR319b:pmrd
Length = 185
Score = 61.9 bits (31), Expect = 1e-10
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 159
|||||| ||| |||||||||||||||||| | |||||| ||||| | |||||||||||
Sbjct: 108 aaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaag 167
Query: 160 ggagctc 166
|||||||
Sbjct: 168 ggagctc 174
Score = 52.0 bits (26), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 60
||||||| ||| ||||||| |||| | | | || |||| |||||| | ||||||||||||
Sbjct: 13 gagcttttttcggtccacttatagatagtaatatgatttaattagttaccgactcattca 72
Query: 61 tccaaatgctgagt 74
||||||| ||||||
Sbjct: 73 tccaaatactgagt 86
>46993_ath-miR319b:pmrd
Length = 172
Score = 61.9 bits (31), Expect = 1e-10
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 159
|||||| ||||||||||| |||||||||||| |||| | || || | ||||||||||||
Sbjct: 103 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 162
Query: 160 ggagctc 166
|||||||
Sbjct: 163 ggagctc 169
>54391_rin-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 35 gattcaattagctgccgactcattcatccaaat 67
||||||||||||| |||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 35 gattcaattagctgccgactcattcatccaaat 67
||||||||||||| |||||||||||||||||||
Sbjct: 151 gattcaattagcttccgactcattcatccaaat 119
>46992_ath-miR319a:pmrd
Length = 176
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 35 gattcaattagctgccgactcattcatccaaat 67
||||||||||||| |||||||||||||||||||
Sbjct: 40 gattcaattagcttccgactcattcatccaaat 72
>54754_tar-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>54670_svi-miR159:pmrd
Length = 191
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48694_mma-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>48479_fal-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>48478_ech-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48429_crb-miR159:pmrd
Length = 194
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 114 aaatgaatgaatgatgcggtagacaaattg 143
>48422_cor-miR159:pmrd
Length = 193
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 113 aaatgaatgaatgatgcggtagacaaattg 142
>48421_cmi-miR159:pmrd
Length = 193
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 113 aaatgaatgaatgatgcggtagacaaattg 142
>48415_bvl-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 8e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 91 atactcatcaaatgagtgaatgatgcgggagacaaattg 129
|||||| | |||||| |||||||||||| ||||||||||
Sbjct: 103 atactcgttaaatgaatgaatgatgcggtagacaaattg 141
>46860_ape-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 8e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 91 atactcatcaaatgagtgaatgatgcgggagacaaattg 129
|||||| | |||||| |||||||||||| ||||||||||
Sbjct: 103 atactcgttaaatgaatgaatgatgcggtagacaaattg 141
>46856_ahi-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>46855_aha-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>46846_acb-miR159:pmrd
Length = 191
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 50 caattagcttccgactcattcatccaaat 78
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 111 aaatgaatgaatgatgcggtagacaaattg 140
>51351_ppl-miR319:pmrd
Length = 204
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 35 gattcaattagctgccgactcattcat 61
|||| ||||||||||||||||||||||
Sbjct: 49 gattgaattagctgccgactcattcat 75
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 143 ctgtacttggactgaagggagctc 166
|||| |||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctc 191
>55050_zma-miR319b:pmrd
Length = 213
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcatccaaatgc 69
||||||||||||||||||||| ||| ||||
Sbjct: 63 aattagctgccgactcattcacccacatgc 92
>54846_vvi-miR319f:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattcatccaaa 66
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 143 ctgtacttggactgaagggagctc 166
|||| |||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctc 179
>54468_sbi-miR319:pmrd
Length = 249
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcatccaaatgc 69
||||||||||||||||||||| ||| ||||
Sbjct: 75 aattagctgccgactcattcacccacatgc 104
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattcatccaaa 66
||||||||||||||||||||| ||||
Sbjct: 42 attagctgccgactcattcattcaaa 67
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 143 ctgtacttggactgaagggagctc 166
|||| |||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctc 170
>51712_ptc-miR319f:pmrd
Length = 202
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcat 61
||||||||||||||||||||||
Sbjct: 55 aattagctgccgactcattcat 76
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 143 ctgtacttggactgaagggagctc 166
|||| |||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctc 191
>51710_ptc-miR319d:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattcatccaaa 66
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 143 ctgtacttggactgaagggagctc 166
|||| |||||||||||||||||||
Sbjct: 159 ctgtgcttggactgaagggagctc 182
>51709_ptc-miR319c:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcat 22
||||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcat 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattcatccaaa 66
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 101 aatgagtgaatgatgcgggagacaaatt 128
|||| ||||||||||||||||| |||||
Sbjct: 119 aatgtgtgaatgatgcgggagataaatt 146
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 143 ctgtacttggactgaagggagctc 166
|||| |||||||||||||||||||
Sbjct: 162 ctgtgcttggactgaagggagctc 185
>48915_osa-miR319b:pmrd
Length = 197
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcatccaaatgc 69
||||||||||||||||||||| ||| ||||
Sbjct: 53 aattagctgccgactcattcacccacatgc 82
>48476_dso-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatcca 64
||||||||| ||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatcca 76
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgactgaatgatgcggtagacaaattg 141
>55053_zma-miR319e:pmrd
Length = 173
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattcatccaaatgc 69
|||||||||||||||||||| ||| ||||
Sbjct: 43 attagctgccgactcattcacccacatgc 71
>55052_zma-miR319d:pmrd
Length = 212
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattcatccaaatgc 69
|||||||||||||||||||| ||| ||||
Sbjct: 63 attagctgccgactcattcacccacatgc 91
>48788_nof-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| ||||||||||||| |||||
Sbjct: 51 caattagcttccgactcattcatacaaat 79
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 143 ctgtacttggactgaagggagctc 166
|||| |||||||||||||||||||
Sbjct: 170 ctgtgcttggactgaagggagctc 193
