miRNEST 2.0, an integrative microRNA resource :: BLAST
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 97.6 bits (49), Expect = 1e-21
Identities = 71/78 (91%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgcaatttttggattctgcatctcactccttt 60
||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 7 cagaagatagagagcacagatgatgatatgcaat----ggactctgcatcccactccttt 62
Query: 61 gtgctctctatgcttctg 78
||||||||||||||||||
Sbjct: 63 gtgctctctatgcttctg 80
>51600_ptc-miR156j:pmrd
Length = 100
Score = 97.6 bits (49), Expect = 1e-21
Identities = 71/78 (91%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgcaatttttggattctgcatctcactccttt 60
||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 15 cagaagatagagagcacagatgatgatatgcaat----ggactctgcatcccactccttt 70
Query: 61 gtgctctctatgcttctg 78
||||||||||||||||||
Sbjct: 71 gtgctctctatgcttctg 88
>46862_aqc-miR156b:pmrd
Length = 83
Score = 87.7 bits (44), Expect = 1e-18
Identities = 70/78 (89%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgcaatttttggattctgcatctcactccttt 60
||||||||||||||||||||||||||| |||| | || ||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatgatgatatgca---tggagagtctgcatctcactccttt 60
Query: 61 gtgctctctatgcttctg 78
||||||||||||||||||
Sbjct: 61 gtgctctctatgcttctg 78
>54772_vvi-miR156g:pmrd
Length = 103
Score = 83.8 bits (42), Expect = 2e-17
Identities = 63/70 (90%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgcaatttttggattctgcatctcactccttt 60
|||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatgatgtgca-----tggagtttgcatctcactccttt 69
Query: 61 gtgctctcta 70
||||||||||
Sbjct: 70 gtgctctcta 79
>51599_ptc-miR156i:pmrd
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/78 (87%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgcaatttttggattctgcatctcactccttt 60
||||||||||||||||||||||||| | |||| | || |||| |||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatgttttgcagta----gactctggatctcactccttt 70
Query: 61 gtgctctctatgcttctg 78
||||||||||||||||||
Sbjct: 71 gtgctctctatgcttctg 88
>54774_vvi-miR156i:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%), Gaps = 5/78 (6%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgcaatttttggattctgcatctcactccttt 60
|||||||||||||||||||||||||| ||||| ||| | |||||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatgaaatgcaa-----ggagccagcatctcactccttt 69
Query: 61 gtgctctctatgcttctg 78
||||||||||| ||||||
Sbjct: 70 gtgctctctattcttctg 87
>48630_gra-miR157a:pmrd
Length = 101
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgcaatt 35
||||||||||||||||||||||||| |||||||||
Sbjct: 9 cagaagatagagagcacagatgatggtgtgcaatt 43
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 45 tgcatctcactcctttgtgctctctatgcttctg 78
|||||| |||||||||||||||| ||||||||||
Sbjct: 60 tgcatcccactcctttgtgctctttatgcttctg 93
>48695_mtr-miR156e:pmrd
Length = 172
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 45 tgcatctcactcctttgtgctctctatgcttctg 78
||||| ||||||||||||||||||||||||||||
Sbjct: 131 tgcatatcactcctttgtgctctctatgcttctg 164
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgca 32
||||||||||||||||||||||||||| ||||
Sbjct: 10 cagaagatagagagcacagatgatgatatgca 41
>48631_gra-miR157b:pmrd
Length = 91
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 45 tgcatctcactcctttgtgctctctatgcttctg 78
|||||| |||||||||||||||||||||||||||
Sbjct: 50 tgcatcccactcctttgtgctctctatgcttctg 83
>48531_gma-miR156d:pmrd
Length = 151
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgca 32
||||||||||||||||||||||||||| ||||
Sbjct: 25 cagaagatagagagcacagatgatgatatgca 56
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 45 tgcatctcactcctttgtgctctctatgcttctg 78
||||||| ||||||||||||||||||| ||||||
Sbjct: 95 tgcatcttactcctttgtgctctctatacttctg 128
>48790_nta-miR157:pmrd
Length = 131
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgat 27
|||||||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatgatgat 31
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 tttgtgctctctatgcttc 76
|||||||||||||||||||
Sbjct: 107 tttgtgctctctatgcttc 125
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 tgcatctcactcctttgtgctctcta 70
||||||||||||||||||||||||||
Sbjct: 49 tgcatctcactcctttgtgctctcta 74
>51598_ptc-miR156h:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 tgcatctcactcctttgtgctctcta 70
||||||||||||||||||||||||||
Sbjct: 58 tgcatctcactcctttgtgctctcta 83
>51597_ptc-miR156g:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatga 26
||||||||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatga 40
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 tgcatctcactcctttgtgctctcta 70
||||||||||||||||||||||||||
Sbjct: 58 tgcatctcactcctttgtgctctcta 83
>48697_mtr-miR156h:pmrd
Length = 94
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatga 26
||||||||||||||||||||||||||
Sbjct: 10 cagaagatagagagcacagatgatga 35
Score = 42.1 bits (21), Expect = 6e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 46 gcatctcactcctttgtgctctctatgcttctg 78
|||||||| ||||||||||||| ||| ||||||
Sbjct: 54 gcatctcattcctttgtgctctttattcttctg 86
>46924_ath-miR157a:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatga 26
||||||||||||||||||||||||||
Sbjct: 8 cagaagatagagagcacagatgatga 33
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 tgcatctcactcctttgtgctctcta 70
||||||| ||||||||||||||||||
Sbjct: 57 tgcatcttactcctttgtgctctcta 82
>46861_aqc-miR156a:pmrd
Length = 81
Score = 52.0 bits (26), Expect = 6e-08
Identities = 65/78 (83%), Gaps = 5/78 (6%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgatgtgcaatttttggattctgcatctcactccttt 60
||||||||||||||||||||||| || |||| |||| | |||||||| | ||||
Sbjct: 4 cagaagatagagagcacagatgacgaattgca-----tggagtttgcatctcgatacttt 58
Query: 61 gtgctctctatgcttctg 78
||||||||||||||||||
Sbjct: 59 gtgctctctatgcttctg 76
>48537_gma-miR157c:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 46 gcatctcactcctttgtgctctcta 70
|||||||||||||||||||||||||
Sbjct: 36 gcatctcactcctttgtgctctcta 12
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 cagaagatagagagcacagatgatga 26
||||||||||||||||| ||||||||
Sbjct: 80 cagaagatagagagcactgatgatga 55
>48532_gma-miR156e:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 gcatctcactcctttgtgctctcta 70
|||||||||||||||||||||||||
Sbjct: 69 gcatctcactcctttgtgctctcta 93
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatga 26
||||||||||||||||| ||||||||
Sbjct: 25 cagaagatagagagcactgatgatga 50
>48642_han-miR157a:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 tcactcctttgtgctctctatgcttctg 78
||||||||| ||||||||||||||||||
Sbjct: 55 tcactccttcgtgctctctatgcttctg 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacaga 24
>46925_ath-miR157b:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgat 24
||||||||||||||||||||||||
Sbjct: 23 cagaagatagagagcacagatgat 46
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 tgcatctcactcctttgtgctctcta 70
||||||| ||||||||||||||||||
Sbjct: 72 tgcatcttactcctttgtgctctcta 97
>54661_stu-miR157a:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 46 gcatctcactcc-tttgtgctctctatgcttctg 78
|||||||||| | |||||||||||||||||||||
Sbjct: 54 gcatctcacttcatttgtgctctctatgcttctg 87
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgat 27
||||||||||||||||| ||||||||
Sbjct: 5 cagaagatagagagcactaatgatgat 31
>54532_sly-miR156a:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tttgtgctctctatgcttctg 78
|||||||||||||||||||||
Sbjct: 76 tttgtgctctctatgcttctg 96
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatgat 27
||||||||||||||||| ||||||||
Sbjct: 5 cagaagatagagagcactaatgatgat 31
>46927_ath-miR157d:pmrd
Length = 221
Score = 42.1 bits (21), Expect = 6e-05
Identities = 34/37 (91%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 43 tctgcatctc-actcctttgtgctctctatgcttctg 78
|||||||||| | |||| |||||||||||||||||||
Sbjct: 154 tctgcatctctattcctatgtgctctctatgcttctg 190
>54570_smo-miR156b:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34
>46926_ath-miR157c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 2e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 44 ctgcatctc-actcctttgtgctctctatgcttctg 78
||||||||| |||| |||||||||||||| ||||||
Sbjct: 150 ctgcatctctactcttttgtgctctctatacttctg 185
