miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48513_ghr-miR399b:pmrd
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 cagggcaactctccttaagcaaaaatggatgtgcttttctttgcataattcgattttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagggcaactctccttaagcaaaaatggatgtgcttttctttgcataattcgattttgcc 60
Query: 61 aaaggagatttgccctg 77
|||||||||||||||||
Sbjct: 61 aaaggagatttgccctg 77
>48752_mtr-miR399c:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tttgccaaaggagatttgccctg 77
|||||||||||||||||||||||
Sbjct: 78 tttgccaaaggagatttgccctg 100
>47015_ath-miR399a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccctg 77
|||||||||||||||||||||
Sbjct: 93 tgccaaaggagatttgccctg 113
>54884_vvi-miR399h:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 54 ttttgccaaaggagatttgccctg 77
||||||||||||||| ||||||||
Sbjct: 57 ttttgccaaaggagaattgccctg 80
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 54 ttttgccaaaggagatttgccctg 77
||||||||||||||| ||||||||
Sbjct: 30 ttttgccaaaggagaattgccctg 7
>51752_ptc-miR399f:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 54 ttttgccaaaggagatttgccctg 77
||||||||||||||| ||||||||
Sbjct: 69 ttttgccaaaggagaattgccctg 92
>54883_vvi-miR399g:pmrd
Length = 113
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 83 tgccaaaggagatttgccc 101
>54881_vvi-miR399e:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 82 tgccaaaggagatttgccc 100
>54494_sbi-miR399f:pmrd
Length = 120
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 81 tgccaaaggagatttgccc 99
>54493_sbi-miR399e:pmrd
Length = 126
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 87 tgccaaaggagatttgccc 105
>53709_ptc-miRf11887-akr:pmrd
Length = 99
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 55 tttgccaaaggagatttgc 73
|||||||||||||||||||
Sbjct: 66 tttgccaaaggagatttgc 84
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgccc 7
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgccc 7
>51757_ptc-miR399k:pmrd
Length = 94
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 55 tttgccaaaggagatttgc 73
|||||||||||||||||||
Sbjct: 64 tttgccaaaggagatttgc 82
>51749_ptc-miR399c:pmrd
Length = 126
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgccc 115
>51748_ptc-miR399b:pmrd
Length = 126
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgccc 115
>51747_ptc-miR399a:pmrd
Length = 120
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 91 tgccaaaggagatttgccc 109
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 85 tgccaaaggagatttgccc 103
>48970_osa-miR399g:pmrd
Length = 119
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 89 tgccaaaggagatttgccc 107
>48969_osa-miR399f:pmrd
Length = 117
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 87 tgccaaaggagatttgccc 105
>48968_osa-miR399e:pmrd
Length = 118
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 88 tgccaaaggagatttgccc 106
>48758_mtr-miR399j:pmrd
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 55 tttgccaaaggagatttgccctg 77
|||||||||| ||||||||||||
Sbjct: 62 tttgccaaagaagatttgccctg 84
>48754_mtr-miR399e:pmrd
Length = 134
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 95 tgccaaaggagatttgccc 113
>48750_mtr-miR399a:pmrd
Length = 134
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 95 tgccaaaggagatttgccc 113
>48377_bna-miR399:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 81 tgccaaaggagatttgccc 99
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 66 tgccaaaggagatttgccc 84
>47020_ath-miR399f:pmrd
Length = 118
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 88 tgccaaaggagatttgccc 106
>47018_ath-miR399d:pmrd
Length = 100
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tgccaaaggagatttgccc 75
|||||||||||||||||||
Sbjct: 70 tgccaaaggagatttgccc 88
