miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51568_pta-miR482b:pmrd
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ggtgtggaaggatagggtaagactagggttaagcagaaactctgcttcattaattctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggtgtggaaggatagggtaagactagggttaagcagaaactctgcttcattaattctctg 62
Query: 61 ctccagtcttccctactcctcccattcc 88
||||||||||||||||||||||||||||
Sbjct: 63 ctccagtcttccctactcctcccattcc 90
>51567_pta-miR482a:pmrd
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 ggtgtggaaggatagggtaagactagggttaagcagaaactctgcttcattaattctctg 60
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 3 ggtgtggaaggatagggtaagactaaggttaaggagaaactctgcttcattaattctctg 62
Query: 61 ctccagtcttccctactcctcccattcc 88
||||||||||||||||||||||||||||
Sbjct: 63 ctccagtcttccctactcctcccattcc 90
>51570_pta-miR482d:pmrd
Length = 92
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 1 ggtgtggaaggatagggtaagactagggttaagcagaaactctgcttcattaattctctg 60
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 3 ggtgtggaaggatagggtaagactaaggttaaggagaaactctgcttcattaattctctg 62
Query: 61 ctccagtcttccctactcctcccattcc 88
|||||||| |||||||||||||||||||
Sbjct: 63 ctccagtcctccctactcctcccattcc 90
>51569_pta-miR482c:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 64 cagtcttccctactcctcccattcc 88
|||||||||||| ||||||||||||
Sbjct: 55 cagtcttccctattcctcccattcc 79
>54895_vvi-miR482:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 agtcttccctactcctcccattcc 88
|||||| |||||||||||||||||
Sbjct: 84 agtctttcctactcctcccattcc 107
