miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48630_gra-miR157a:pmrd
Length = 101
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaatgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ttgacagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaatgcat 64
Query: 61 cccactcctttgtgctctttatgcttctgtca 92
||||||||||||||||||||||||||||||||
Sbjct: 65 cccactcctttgtgctctttatgcttctgtca 96
>48631_gra-miR157b:pmrd
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 55 atgcatcccactcctttgtgctctttatgcttctgtca 92
|||||||||||||||||||||||| |||||||||||||
Sbjct: 49 atgcatcccactcctttgtgctctctatgcttctgtca 86
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatggtgt 33
|||||||||||||||||||||||||||||||||
Sbjct: 5 ttgacagaagatagagagcacagatgatggtgt 37
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 56 tgcatcccactcctttgtgctctttatgcttctgtca 92
||||||||||||||||||||||| |||||||||||||
Sbjct: 47 tgcatcccactcctttgtgctctctatgcttctgtca 83
>51600_ptc-miR156j:pmrd
Length = 100
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 56 tgcatcccactcctttgtgctctttatgcttctgtca 92
||||||||||||||||||||||| |||||||||||||
Sbjct: 55 tgcatcccactcctttgtgctctctatgcttctgtca 91
>54772_vvi-miR156g:pmrd
Length = 103
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatggtgtgca 36
||||||||||||||||||||||||||||| ||||||
Sbjct: 11 ttgacagaagatagagagcacagatgatgatgtgca 46
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 56 tgcatcccactcctttgtgctctttatgcttctgtca 92
|||||| |||||||||||||||| || |||||||||
Sbjct: 54 tgcatctcactcctttgtgctctctagacttctgtca 90
>54774_vvi-miR156i:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatg 29
|||||||||||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagcacagatgatg 39
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 57 gcatcccactcctttgtgctctttatgcttctgtca 92
||||| |||||||||||||||| ||| |||||||||
Sbjct: 55 gcatctcactcctttgtgctctctattcttctgtca 90
>51599_ptc-miR156i:pmrd
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatg 29
|||||||||||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagcacagatgatg 39
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 cactcctttgtgctctttatgcttctg 89
|||||||||||||||| ||||||||||
Sbjct: 62 cactcctttgtgctctctatgcttctg 88
>51597_ptc-miR156g:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatg 29
|||||||||||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagcacagatgatg 39
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 56 tgcatcccactcctttgtgctctttatgcttctgtca 92
|||||| |||||||||||||||| || |||||||||
Sbjct: 58 tgcatctcactcctttgtgctctctagtcttctgtca 94
>48790_nta-miR157:pmrd
Length = 131
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatg 29
|||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcacagatgatg 29
>48697_mtr-miR156h:pmrd
Length = 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatg 29
|||||||||||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagcacagatgatg 34
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 57 gcatcccactcctttgtgctctttatgcttctgtca 92
||||| || ||||||||||||||||| |||||||||
Sbjct: 54 gcatctcattcctttgtgctctttattcttctgtca 89
>48695_mtr-miR156e:pmrd
Length = 172
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatg 29
|||||||||||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagcacagatgatg 34
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 cactcctttgtgctctttatgcttctgtca 92
|||||||||||||||| |||||||||||||
Sbjct: 138 cactcctttgtgctctctatgcttctgtca 167
>48531_gma-miR156d:pmrd
Length = 151
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatg 29
|||||||||||||||||||||||||||||
Sbjct: 21 ttgacagaagatagagagcacagatgatg 49
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 64 actcctttgtgctctttatgcttctgtca 92
||||||||||||||| ||| |||||||||
Sbjct: 103 actcctttgtgctctctatacttctgtca 131
>46924_ath-miR157a:pmrd
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatg 29
|||||||||||||||||||||||||||||
Sbjct: 4 ttgacagaagatagagagcacagatgatg 32
>46862_aqc-miR156b:pmrd
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 56 tgcatcccactcctttgtgctctttatgcttctgtca 92
|||||| |||||||||||||||| |||||||||||||
Sbjct: 45 tgcatctcactcctttgtgctctctatgcttctgtca 81
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcacagatgatg 29
||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatg 28
>46925_ath-miR157b:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgat 28
||||||||||||||||||||||||||||
Sbjct: 19 ttgacagaagatagagagcacagatgat 46
>46861_aqc-miR156a:pmrd
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcacagatga 27
||||||||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatga 26
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 68 ctttgtgctctttatgcttctgtca 92
||||||||||| |||||||||||||
Sbjct: 55 ctttgtgctctctatgcttctgtca 79
>48537_gma-miR157c:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 ttgacagaagatagagagcacagatgatg 29
||||||||||||||||||||| |||||||
Sbjct: 84 ttgacagaagatagagagcactgatgatg 56
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 57 gcatcccactcctttgtgctctttatgcttctgtca 92
||||| |||||||||||||||| || |||||||||
Sbjct: 36 gcatctcactcctttgtgctctctagtcttctgtca 1
>48532_gma-miR156e:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacagatgatg 29
||||||||||||||||||||| |||||||
Sbjct: 21 ttgacagaagatagagagcactgatgatg 49
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 57 gcatcccactcctttgtgctctttatgcttctgtca 92
||||| |||||||||||||||| || |||||||||
Sbjct: 69 gcatctcactcctttgtgctctctagtcttctgtca 104
>48642_han-miR157a:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcacaga 24
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcacaga 24
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 cactcctttgtgctctttatgcttctgtca 92
|||||||| ||||||| |||||||||||||
Sbjct: 56 cactccttcgtgctctctatgcttctgtca 85
>54570_smo-miR156b:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcacaga 24
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
>54771_vvi-miR156f:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcaca 22
||||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagcaca 32
>48696_mtr-miR156f:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcaca 22
||||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagcaca 27
>48675_lja-miR157a:pmrd
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcaca 22
||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcaca 22
>48530_gma-miR156c:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcaca 22
||||||||||||||||||||||
Sbjct: 146 ttgacagaagatagagagcaca 167
>54661_stu-miR157a:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 69 tttgtgctctttatgcttctgtca 92
|||||||||| |||||||||||||
Sbjct: 67 tttgtgctctctatgcttctgtca 90
>54534_sly-miR156c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54532_sly-miR156a:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 69 tttgtgctctttatgcttctgtca 92
|||||||||| |||||||||||||
Sbjct: 76 tttgtgctctctatgcttctgtca 99
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 2 ttgacagaagatagagagcac 22
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 56 tgcatcccactcctttgtgctctttatgcttctgtca 92
|||||| |||||||||||||||| || |||||||||
Sbjct: 49 tgcatctcactcctttgtgctctctagtcttctgtca 85
>51598_ptc-miR156h:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagcac 31
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 56 tgcatcccactcctttgtgctctttatgcttctgtca 92
|||||| |||||||||||||||| || |||||||||
Sbjct: 58 tgcatctcactcctttgtgctctctagtcttctgtca 94
>51552_pta-miR156b:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcaca 22
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>51551_pta-miR156a:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcaca 22
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>48393_bra-miR157a:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 14 ttgacagaagatagagagcac 34
>48384_bol-miR157a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagcac 26
>48338_bna-miR156c:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 18 ttgacagaagatagagagcac 38
>48337_bna-miR156b:pmrd
Length = 208
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 25 ttgacagaagatagagagcac 45
>46926_ath-miR157c:pmrd
Length = 217
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 24 ttgacagaagatagagagcac 44
>54537_sly-miR157c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>51323_pco-miR157:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>46927_ath-miR157d:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcac 21
||||||||||||||||||||
Sbjct: 24 tgacagaagatagagagcac 43
