miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48827_osa-miR160b:pmrd
Length = 139
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 cttgagagcgtgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 cttgagagcgtgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttg 79
Query: 61 gatgctgtgggtggcgtgcaaggagccaagcatgcgtgcca 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gatgctgtgggtggcgtgcaaggagccaagcatgcgtgcca 120
>48832_osa-miR160m:pmrd
Length = 82
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 60
Query: 71 gtggcgtgcaaggagccaagca 92
||||||||||||||||||||||
Sbjct: 61 gtggcgtgcaaggagccaagca 82
>54405_sbi-miR160b:pmrd
Length = 82
Score = 123 bits (62), Expect = 3e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 70
|||||||||||||||||||||| |||||||||||| || ||| ||| |||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagcccaacccgtggcgtgattggatgctgtgg 60
Query: 71 gtggcgtgcaaggagccaagca 92
||||||||||||||||||||||
Sbjct: 61 gtggcgtgcaaggagccaagca 82
>54939_zma-miR160b:pmrd
Length = 121
Score = 115 bits (58), Expect = 6e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtg 69
||||||||||||||||||||||| ||||||||| || || ||| ||| ||||||||||||
Sbjct: 20 gtgcctggctccctgtatgccacacatgtagcc-aacccgtggcgtgattggatgctgtg 78
Query: 70 ggtggcgtgcaaggagccaagcatgc 95
||||||||||||||||||||||||||
Sbjct: 79 ggtggcgtgcaaggagccaagcatgc 104
>54947_zma-miR160m:pmrd
Length = 81
Score = 107 bits (54), Expect = 2e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 70
|||||||||||||||||||||| ||||||||| || || ||| ||| |||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagcc-aacccgtggcgtgattggatgctgtgg 59
Query: 71 gtggcgtgcaaggagccaagca 92
||||||||||||||||||||||
Sbjct: 60 gtggcgtgcaaggagccaagca 81
>48826_osa-miR160a:pmrd
Length = 88
Score = 75.8 bits (38), Expect = 5e-15
Identities = 77/88 (87%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgc--tg 67
||||||||||||||||||||||| ||||||| |||| ||||| |||| ||| |||
Sbjct: 3 gtgcctggctccctgtatgccacacatgtagaccaacccatg--gtgtctggttgcctac 60
Query: 68 tgggtggcgtgcaaggagccaagcatgc 95
||||||||||||||||||||||||||||
Sbjct: 61 tgggtggcgtgcaaggagccaagcatgc 88
>54404_sbi-miR160a:pmrd
Length = 84
Score = 73.8 bits (37), Expect = 2e-14
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcatgtagcccaatcc--atggtgtgtttggatgctgt 68
|||||||||||||||||||||| |||||||||||| || ||| | | ||| ||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagcccaacccatatgctaaggttgcctgctgt 60
Query: 69 gggtggcgtgcaaggagccaagca 92
||||||||||||||| ||||||||
Sbjct: 61 gggtggcgtgcaaggggccaagca 84
>54938_zma-miR160a:pmrd
Length = 104
Score = 67.9 bits (34), Expect = 1e-12
Identities = 79/92 (85%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 8 gcgtgcctggctccctgtatgccactcatgta--gcccaatcc--atggtgtgtttggat 63
||||||||||||||||||||||||| |||||| |||||| || ||| | | ||| |
Sbjct: 7 gcgtgcctggctccctgtatgccacacatgtagcgcccaacccagatgytaaggttgcct 66
Query: 64 gctgtgggtggcgtgcaaggagccaagcatgc 95
|||||||||||||||||||| |||||||||||
Sbjct: 67 gctgtgggtggcgtgcaaggggccaagcatgc 98
>54945_zma-miR160h:pmrd
Length = 86
Score = 56.0 bits (28), Expect = 5e-09
Identities = 73/86 (84%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcatgta--gcccaatcc--atggtgtgtttggatgct 66
|||||||||||||||||||||| |||||| |||||| || ||| | | ||| ||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagcgcccaacccagatgttaaggttgcctgct 60
Query: 67 gtgggtggcgtgcaaggagccaagca 92
||||||||||||||||| ||||||||
Sbjct: 61 gtgggtggcgtgcaaggggccaagca 86
>54944_zma-miR160g:pmrd
Length = 86
Score = 56.0 bits (28), Expect = 5e-09
Identities = 73/86 (84%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcatgta--gcccaatcc--atggtgtgtttggatgct 66
|||||||||||||||||||||| |||||| |||||| || ||| | | ||| ||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagcgcccaacccagatgctaaggttgcctgct 60
Query: 67 gtgggtggcgtgcaaggagccaagca 92
||||||||||||||||| ||||||||
Sbjct: 61 gtgggtggcgtgcaaggggccaagca 86
>54940_zma-miR160c:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccactcat 36
|||||||||||||||||||||||||||
Sbjct: 6 gtgcctggctccctgtatgccactcat 32
>48828_osa-miR160c:pmrd
Length = 99
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccactcat 36
|||||||||||||||||||||||||||
Sbjct: 6 gtgcctggctccctgtatgccactcat 32
>54759_ttu-miR160a:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcat 36
||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcat 26
>54406_sbi-miR160c:pmrd
Length = 83
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcat 36
||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcat 26
>54946_zma-miR160i:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgccactc 25
>54942_zma-miR160e:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgccactc 32
>54941_zma-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccactc 44
>54675_tae-miR160:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgccactc 45
>54408_sbi-miR160e:pmrd
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>54407_sbi-miR160d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>48833_osa-miR160n:pmrd
Length = 131
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>48829_osa-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 8 tgcctggctccctgtatgccactc 31
>48791_oba-miR160:pmrd
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccact 33
||||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccact 26
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 69 gggtggcgtgcaaggagccaagcat 93
||||||||||| |||||||||||||
Sbjct: 64 gggtggcgtgcgaggagccaagcat 88
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 cgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 3 cgtgcctggctccctgtatgccac 26
>46935_ath-miR160b:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 cgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 3 cgtgcctggctccctgtatgccac 26
>54780_vvi-miR160c:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccac 32
|||||||||||||||||||||||
Sbjct: 10 gtgcctggctccctgtatgccac 32
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 69 gggtggcgtgcaaggagccaagcat 93
||||||||||| |||||||||||||
Sbjct: 71 gggtggcgtgcgaggagccaagcat 95
>51363_ppt-miR160e:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccact 33
|||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccact 52
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 12 tgcctggctccctgtatgccac 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ggtggcgtgcaaggagccaagcat 93
|||||||||| |||||||||||||
Sbjct: 74 ggtggcgtgcgaggagccaagcat 97
>51611_ptc-miR160d:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ggtggcgtgcaaggagccaagcat 93
|||||||||| |||||||||||||
Sbjct: 73 ggtggcgtgcgaggagccaagcat 96
>51610_ptc-miR160c:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 10 gtgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 10 gtgcctggctccctgtatgcca 31
>51608_ptc-miR160a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ggtggcgtgcaaggagccaagcat 93
|||||||||| |||||||||||||
Sbjct: 72 ggtggcgtgcgaggagccaagcat 95
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51334_pga-miR160:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48704_mtr-miR160e:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 5 gtgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 5 gtgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 5 gtgcctggctccctgtatgcca 26
>48542_gma-miR160a:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 20 gtgcctggctccctgtatgcca 41
>46936_ath-miR160c:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>54783_vvi-miR160f:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgcca 40
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgccac 32
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48658_hvv-miR160a:pmrd
Length = 344
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 324 tgcctggctccctgtatgcca 344
>48635_gra-miR160b:pmrd
Length = 293
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 gagcgtgcctggctccctgtatgcc 30
|||| ||||||||||||||||||||
Sbjct: 268 gagcatgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 gagcgtgcctggctccctgtatgcc 30
|||| ||||||||||||||||||||
Sbjct: 81 gagcatgcctggctccctgtatgcc 105
>48397_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
