miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54643_sof-miR319b:pmrd
Length = 176
Score = 343 bits (173), Expect = 3e-95
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
Query: 61 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 122
Query: 121 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 175
>54630_sof-miR159c:pmrd
Length = 238
Score = 343 bits (173), Expect = 3e-95
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
Query: 61 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 165
Query: 121 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 218
>54403_sbi-miR159b:pmrd
Length = 253
Score = 335 bits (169), Expect = 7e-93
Identities = 172/173 (99%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 120
Query: 61 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgaccc 180
Query: 121 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 233
>55054_zma-miR319m:pmrd
Length = 178
Score = 270 bits (136), Expect = 3e-73
Identities = 166/175 (94%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
Query: 61 tgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatgac 118
| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 63 tacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatgac 122
Query: 119 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 173
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 177
>54936_zma-miR159g:pmrd
Length = 180
Score = 270 bits (136), Expect = 3e-73
Identities = 166/175 (94%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 63
Query: 61 tgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatgac 118
| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 64 tacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatgac 123
Query: 119 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 173
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 178
>54932_zma-miR159c:pmrd
Length = 217
Score = 270 bits (136), Expect = 3e-73
Identities = 166/175 (94%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 82
Query: 61 tgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatgac 118
| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 83 tacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatgac 142
Query: 119 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 173
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 197
>54933_zma-miR159d:pmrd
Length = 217
Score = 262 bits (132), Expect = 8e-71
Identities = 165/175 (94%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
Query: 61 tgcctctctggtgcagcaatgactaa--tgctcacctgcacttgcatgggtgtgcatgac 118
| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 83 tacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatgac 142
Query: 119 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 173
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctcc 197
>54935_zma-miR159f:pmrd
Length = 181
Score = 232 bits (117), Expect = 7e-62
Identities = 163/176 (92%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccagg-aggggaagtggtcggttgcagctgccggttcatgg 59
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 4 gagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttcatgg 63
Query: 60 atgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatga 117
|| | ||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 64 atacttctctggtgcagcaatggccgcagctcacctctgcacttgcatgggtgtgcatga 123
Query: 118 cccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 173
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 179
>48824_osa-miR159f:pmrd
Length = 188
Score = 131 bits (66), Expect = 2e-31
Identities = 146/172 (84%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 61 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 120
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
Query: 121 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 172
|||||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>48821_osa-miR159c:pmrd
Length = 197
Score = 99.6 bits (50), Expect = 7e-22
Identities = 144/174 (82%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 61 tgcctctctggtgca-gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacc 119
| ||||| ||||| | | | | || ||||||||||||||||| |||||||||
Sbjct: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
Query: 120 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 173
||||||||||||||||||| |||| | || || |||||||||||||||||||
Sbjct: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>48822_osa-miR159d:pmrd
Length = 189
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 61 tgcctct 67
| |||||
Sbjct: 73 tacctct 79
Score = 65.9 bits (33), Expect = 9e-12
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 93 cctgcacttgcatgggtgtgcatgacccgggagatgaacccaccatcatctttccctcgt 152
||||||||||||||||| ||||||||| |||||||||||| |||| | || | || |
Sbjct: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacctgccattgtgttcctctatt 157
Query: 153 gcttggattgaagggagctcc 173
| |||||||||||||||||||
Sbjct: 158 gattggattgaagggagctcc 178
>48823_osa-miR159e:pmrd
Length = 191
Score = 79.8 bits (40), Expect = 6e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 gagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgg 59
|||||||||| ||||||||| |||||| ||||||||| || |||||||||||||||||||
Sbjct: 13 gagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatgg 72
Query: 60 atgcctct 67
|| |||||
Sbjct: 73 atacctct 80
>54573_smo-miR159:pmrd
Length = 279
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cttggattgaagggagctcc 173
||||||||||||||||||||
Sbjct: 249 cttggattgaagggagctcc 268
>51605_ptc-miR159d:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cttggattgaagggagctcc 173
||||||||||||||||||||
Sbjct: 165 cttggattgaagggagctcc 184
>51562_pta-miR319:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 154 cttggattgaagggagctcc 173
||||||||||||||||||||
Sbjct: 27 cttggattgaagggagctcc 8
>51555_pta-miR159c:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cttggattgaagggagctcc 173
||||||||||||||||||||
Sbjct: 49 cttggattgaagggagctcc 68
>51553_pta-miR159a:pmrd
Length = 210
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cttggattgaagggagctcc 173
||||||||||||||||||||
Sbjct: 184 cttggattgaagggagctcc 203
>51547_psi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cttggattgaagggagctcc 173
||||||||||||||||||||
Sbjct: 173 cttggattgaagggagctcc 192
